| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1338 |
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| Symbol | |
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| ID | 4172802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1603657 |
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| End bp | 1606452 |
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| Gene Length | 2796 bp |
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| Protein Length | 931 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638054345 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_660918 |
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| Protein GI | 109897663 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTTC GTTCACTTCC CATTTCGCTT CGTGCCATTG CTTTTTGCGC AGTATTACCT
TCATTGGCGT TCGCCGATAC ATCTGAAAAC TATGAAAAAG CGCTCTCTGC GTTTAATCAA
GAAGCATTCT CTGATTCTTA TATTCATCTT AAAAATGCCC TGCAAGAGTC CCCGTCTCAT
TTACCGTCGA AACTGCTAAT GGGTCGTGTT TTATTAGTAG ACGGTTATAT CAATGACGCT
ATCACAGAAT TTGAAGAGGT TATGGATGCA GGCGCAGATT TAAACTTAGT GCTAGTGCCA
TTGGCAAATG CTTACCTGAT TAGTCGAAGA TTTGACGCAC TTATCGATTT GCCGACACCT
CGCAGTTTAT CTTCATCCGT AAAGCTCGAT GTTCAGCTAT TAAAAGCGGC GGCGCATATT
CAGAAAAAGG AGTTAGATAA AGCAAAATCT ATTTATCAGA ATGCCCAACT TCAGCTCGGT
GAAAACAGCA ATGTATTAAA CGGATTAGCG CAGATAGCAC TTTTGAATAA AGAATATGCT
CAAGCTAACC AATATCTAGA TGAAGCCCTG TCAATTGACC ATAACAATGC CAAAAGTCTA
ATGATGCGTG GCTTAGTGTT GCAAAGCCAG GGCAAAAGTG ACGAAGCTCG AACCCAATTT
GAGCTTGCCT ATCAGTTTGA TGACTTCGAC CCAACCATTA AACGCGCTCT TGCCAATAGT
TACGTAGAAG CGAATATGCT CAGTAAAGCA CAGGAGATGA TTGCCCTTAT TGAAGAACAA
ACCTCTGGTG ACTTGCAAAC GCAACTATTA AAAGCCCGCG TATTAGCGAT GCAAGAAAAA
AGCTCAGAGG CTGATGCACT ACTCGCTCAA CTTAATCAAA TGTTGAGCTT GGCCACCGAA
GAAAATAAAG AACAAACAAG CTGGCTCAGC TTAGTTGCTG GCATAACCGC TTATATTAAC
AAAAATTACG AAGTCACCGT GCGAGAGCTA AGCCGCTATA TTAAAAGTGG CTCAGCTCCT
CCAGAATTAT TAGGTATGTT GGCCGAAGCG CATATTCGTC AAGGTGACGC TAAAAAGGCC
ATGGAATTGC TCGAGCTCAA CGAGCGTATC GTGCTCAGTA GTGTTCCTGT ATCGTCTTTA
TTATGCGACC TGTATTTAGC AAATAACAAA GTATTTAAGT GCGATAGCCT AGTTGAAGAA
TTGAAACAGG TGCATGACAG TAATCATACG ATTATTTTAT TAGAGGCAAA GCTGCTAGTA
CGTAGAGACA AAATTGATGA CGCCCTCGCT CTTTTAGGTA ACAGCCTTCT TGATGCTAAT
GCACAAGACG TTCTACTTTT TAAAGCGACA CTTGAAGCTA ACAATCAACG CTATGAAGAC
GCATTACTGT CTGCTAATAA ATTGATTGAA TTAGCACCCG AAAATGTAGA TTACAAAAAT
CTACATGCAG ATCTGCACAT CCGCTTGGGT CACTTTGCCC AAGCAAAATC CTCTTTAAAC
AAAGTGCTCG CGACAGATCC TAACAACATA GCGGCGCTAA TGAATTTGTC CCGAGTTCAA
TTTGCACAAC AAGCGCTATC AGAGTCTCGT CAAACAATTG AAAAAGTCAT TACTATTCAA
CCGACGAATA TATCGGCACT TGTTTTGCGC GCTCAAATAT TAGTCAAGCA GGGAAATCTT
GATGATGCAG TAGAGGCACT ACTCACGGCG AAAGCCGCAG CCCCTAATAA GGCGGCTCCC
CATGAACTTC TTGCCAATAT TTATCGTGTG CAACAGAAGT ACGCTATTGC ATTAGATGAA
ATTAATGCTC TGCTGAAAAT AGACCGGTTA AATTCAGCTT ACATATTCGA AAAAGCGAAT
TTGCTGATAG CATTAGATGA ACCGCAAAAA GCCAAGAACC AATTGGATAT CTTATCCGCA
CAATGGTCAG ATGATGCCTC TCAACTCGTT GAATTAAGTC GTGTTCAATT ACAAGCAAAC
GACATAAGCG GTGCAAAATT GAGCTTAGAA AGAGCATCTG TTATTGCCCC GCAATATGCG
TTAGCGAAAC TTGAGTACGG TCAATTACTT ATCAATCAAG GGAATTTAAC CGACGCAAAA
TACGTTATTG ATAATATGCA AAAAAGCTTT ACTAATAACC CGAATGTATA TGTATTACAG
GGGAATTACT TTAAAGCCTT GAACGATGAT GACCAAGCTT ACAGCGCTTA TTTTGAGGCC
GTCACGCTTA ACCCTAACTT TACCCTGCCG CTTATCGAGT TATATCAAAT AGCCAGTCAC
GGTAAACATC AACAAGACTT TAAAGAGTAT TTGAAGCAGC ACTTATTGAC GAATGAGGAT
GCACACTTTC AAAGACACCT TCTTGCGGAT TTACTCTACA TTGAAAAAAG TATGCAACGC
GCAGAGGCTC ATTACCTCAA ACTTATCGCG GTTGAAGACT TGCCCAACAA AGCCCGTATA
TATAATAACC TCGCTTTAAT CAAAGTCCGT TCCCAACCAG AACTAGGCTT AGAGTACGCT
CAAAGCGCAG TCGAACTAGC GCCGAACTCT GCCGCTATCT TAGACACCAA AGGTTGGTTA
TTGGTTAATA ACGCACGCTA TCAAGAAGCA CTAACGACAC TGCGAACAGC TTTTACCATG
CGTTCGAATG ATCCCTCTAT CCGATATCAC TTAGCTACCG CATTAAAAGG ACTGGGTAAA
ATTGACCAGG CGAAAAATGA ATTGAAACAA GCATTGGCAA GTAATAAAAC GTTTCCTGAA
AAACGAGATG CTCAAGCGTT GCTTCAAACG CTGTAA
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| Protein sequence | MKLRSLPISL RAIAFCAVLP SLAFADTSEN YEKALSAFNQ EAFSDSYIHL KNALQESPSH
LPSKLLMGRV LLVDGYINDA ITEFEEVMDA GADLNLVLVP LANAYLISRR FDALIDLPTP
RSLSSSVKLD VQLLKAAAHI QKKELDKAKS IYQNAQLQLG ENSNVLNGLA QIALLNKEYA
QANQYLDEAL SIDHNNAKSL MMRGLVLQSQ GKSDEARTQF ELAYQFDDFD PTIKRALANS
YVEANMLSKA QEMIALIEEQ TSGDLQTQLL KARVLAMQEK SSEADALLAQ LNQMLSLATE
ENKEQTSWLS LVAGITAYIN KNYEVTVREL SRYIKSGSAP PELLGMLAEA HIRQGDAKKA
MELLELNERI VLSSVPVSSL LCDLYLANNK VFKCDSLVEE LKQVHDSNHT IILLEAKLLV
RRDKIDDALA LLGNSLLDAN AQDVLLFKAT LEANNQRYED ALLSANKLIE LAPENVDYKN
LHADLHIRLG HFAQAKSSLN KVLATDPNNI AALMNLSRVQ FAQQALSESR QTIEKVITIQ
PTNISALVLR AQILVKQGNL DDAVEALLTA KAAAPNKAAP HELLANIYRV QQKYAIALDE
INALLKIDRL NSAYIFEKAN LLIALDEPQK AKNQLDILSA QWSDDASQLV ELSRVQLQAN
DISGAKLSLE RASVIAPQYA LAKLEYGQLL INQGNLTDAK YVIDNMQKSF TNNPNVYVLQ
GNYFKALNDD DQAYSAYFEA VTLNPNFTLP LIELYQIASH GKHQQDFKEY LKQHLLTNED
AHFQRHLLAD LLYIEKSMQR AEAHYLKLIA VEDLPNKARI YNNLALIKVR SQPELGLEYA
QSAVELAPNS AAILDTKGWL LVNNARYQEA LTTLRTAFTM RSNDPSIRYH LATALKGLGK
IDQAKNELKQ ALASNKTFPE KRDAQALLQT L
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