| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1297 |
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| Symbol | |
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| ID | 4173345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1562690 |
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| End bp | 1563994 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638054304 |
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| Product | peptidase M20 |
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| Protein accession | YP_660877 |
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| Protein GI | 109897622 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0144616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAAAA AATCATCTGT TTTACTTATG TGCGCTGGGT TATTTTGTCA GCCAGCATTG
GCCAGCCGCC TGGTTGAAAA TGCCTTGGTA GAGCAAACAA GCCAAGAGTT AGCGAGCGCC
AAAGCGTTAC TGTTAAAAAC GGTCAATATT AACAGTGGCA CCATGAATTT TGCTGGCGTG
AAAGAAGTCG GTGACATCAT GCGCAAAGAG TATGACGCCC TAGGCTTTGA CACCCAGTGG
GTCGATGGCA GTGAATTTAA CCGGGCAGGG CATCTTGTTG CTACCTATGA ATCTCCGACT
CATCCAAGCG GCCAAAAGCT TTTGTTAATC GGCCATTTGG ATACGGTGTT TGCTAAAGAC
GATGACTTCC AGCAAGCCAA AGAAATAGAC GAGCAACATA TTGCCGGGCC GGGCATTTCA
GATATGAAAG GCGGCAATGT GATCATGCTG ACCGCCATTA AAGCCCTAAA AGCCAAAGGC
ATGCTTGACC GCTTAAATAT TAAAGTGGTG CTTACCGGTG ATGAAGAGTC CAGCGGTCGC
CCGTTGAGTC AATCTAAAAA AGCCTTAATC GATGCGGCTA TTTGGGCTGA CGTCGCCCTT
GGTTTTGAAG ATGCCGATGG CGATATTCGT ACAGCGGTTA CTGCACGGCG CGGTGCATCT
ACGTGGCAAG TGACCACATC TGGCAACGCT GCCCACTCGT CACAAATATT CACCGACAAA
GTGGGTGATG GGGCGATATT TGAAATGGCG CGTATTTTAC AAGAATTCCG TTTACAACTG
ACCGATTTGC CTTTGCTTAG CTTTAACCCT GGTGTGATTG CAGGTGGTAC GCGGGTAACA
ACGAGTAAGG GCGGCGATGA AGTGGTCGCC TTTGGCAAAA CAAACGTTGT CGCCAAAGAT
GCCTCGGTAA AAGGCGGCCT GCGGGCGGCA TCTCAAGAGC AGATAGAACA AGCCAAAGCA
ATTATGAGCC AGGTAGTGGA GCAACACTTA GCGCAAACCG ATGCCACTTT CACCTTTGAT
GAGGGCTACC CGCCCATGAA AGAAACCAAA GGCAATAAAT CACTGCTGGC TCAGTACAGT
CAAGTCAGCG TTGATTTAGG CTATGGTCCG GTAACAGCGG TTAACCCGCG AAATGCCGGG
GCGGCAGATA TCTCGTTTAC CGCAGGGCAC GTGAAAATGG CCATCGATGG GTTAGGCCTG
ATGGGCGAGG GCGGTCATAC CAAAGATGAA GTGGCAGATA TGCGTACCTT TAAACAGAAT
ATCGAGAAAA CCGCGGTGTT GATGTATCGC TTATCCAATC CTTAG
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| Protein sequence | MLKKSSVLLM CAGLFCQPAL ASRLVENALV EQTSQELASA KALLLKTVNI NSGTMNFAGV
KEVGDIMRKE YDALGFDTQW VDGSEFNRAG HLVATYESPT HPSGQKLLLI GHLDTVFAKD
DDFQQAKEID EQHIAGPGIS DMKGGNVIML TAIKALKAKG MLDRLNIKVV LTGDEESSGR
PLSQSKKALI DAAIWADVAL GFEDADGDIR TAVTARRGAS TWQVTTSGNA AHSSQIFTDK
VGDGAIFEMA RILQEFRLQL TDLPLLSFNP GVIAGGTRVT TSKGGDEVVA FGKTNVVAKD
ASVKGGLRAA SQEQIEQAKA IMSQVVEQHL AQTDATFTFD EGYPPMKETK GNKSLLAQYS
QVSVDLGYGP VTAVNPRNAG AADISFTAGH VKMAIDGLGL MGEGGHTKDE VADMRTFKQN
IEKTAVLMYR LSNP
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