| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1218 |
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| Symbol | |
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| ID | 4172684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1469905 |
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| End bp | 1470483 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638054225 |
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| Product | rhomboid-like protein |
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| Protein accession | YP_660798 |
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| Protein GI | 109897543 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATAGCA AAACACTCAC TTCGCGCAAT CCTTCTCGCT TAAGCCAGCA GTTAAAAACG
GTAGGCATTA TCTTCATTGT GATCACCGCC ATAGAGATCT TTAATCTTCT CACTGGGCGC
ATGTTAAATC ACTTTGGCAA TATTCCACGT TACATTCCTG GGCTTGTTGG CGTCTTAACC
GGTCCTTTTT TACACGGTAG TGTGAGCCAT TACCTGTCGA ATATTATTCC GTTGTGTGTG
TTGAGCTTTC TAATGCTGCA ATACGGTAAT AAGCGTTTTT TTGGTGTCAC GTTCTTTTGT
ATTGTCCTAA CAGGGTTGTT GGTGTGGTTA TTTGGCCGCT CAGCCAGTCA TATCGGTGCG
AGCAGCGTGA TATACAGTTA TTTTGGCTTT CTTTTATTAG CAGGGTTTTT AAGCCGAAAG
TTTAAGCTCA TTATTATTTC CTTGTTAGTG GCCTTTTTTT ATGGCGGCTT AATATTCGGC
GTATTGCCTG CAAGAACCTT TGTATCTTGG GAAGGCCATT TGTTCGGCTT TATCTCTGGC
TTGATTGCTG CGAGATTGTG GGCCAAAAAT GTGCGCTAA
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| Protein sequence | MNSKTLTSRN PSRLSQQLKT VGIIFIVITA IEIFNLLTGR MLNHFGNIPR YIPGLVGVLT
GPFLHGSVSH YLSNIIPLCV LSFLMLQYGN KRFFGVTFFC IVLTGLLVWL FGRSASHIGA
SSVIYSYFGF LLLAGFLSRK FKLIIISLLV AFFYGGLIFG VLPARTFVSW EGHLFGFISG
LIAARLWAKN VR
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