| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1110 |
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| Symbol | |
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| ID | 4173639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1338748 |
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| End bp | 1340625 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054116 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660690 |
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| Protein GI | 109897435 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000459108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACACC GCCCATTGGC TATCGCCATC TCTCTCGCGT TGGCTGTAAG CCCAGCTATC
GCACAAACTA CTGATGCTCA GGCAGCTAAT TCAACAGACG TTGCTAGCAA AACCGACCGC
CCGCTTGAAC GTATGGTTGT AGTGTCAAGC CGGGTAGCTA TGCCCATTCG TGAAATCGCT
ACGTCTGTAT CAATTATGAC CCGGGATGAA ATTGAAACCC GTGGTTATAT CAATTTAGCA
GATGTGCTAC GCACCCAGCC CTCAGTGACT GTGACAGGCA GTGGTAGCGT AGGCTCAGCC
ACCAGCTTAC GTATTCGCGG TGAAGAAGGT TACCGCACGT TGGTACGTAT TGATGGCGTT
GATGTTTCTG ACCCAACCGG CACTCAAGTC GGCCCTAAAT TCGGGCAAAT ACAAAGTAGC
AACATCAACC GTGTTGAAAT ACTCCGTGGT AGCCAAGGCT TGGTGTATGG CGCCGATGCT
GGCGGGGTGA TTAATATTGA AACCGCTAAC GGTGTAGGCG CGCCCTCTGG TCACGTTTCA
GCAGAATATG GGCGCTATAA CGCGACCAAT TTGGCGGCTG ATGTAGGAGG TTCAAGAGAT
AAATTCGACT ACTATGTTGC CGCATCTGAT TTCTCAACCG ATGGTTTTAA CTCACTCATT
GCTGACAATG AAACCCCAGA CGCTGACGGA TATGACAACA CCACCCTTCA TGCCCGGTTA
GGTTATCAAG CCAGCGACAG TCTGAAACTT GGTTTTGTCG CTCGTAGTAC CGATGCTGAT
GGCAAGTTTG ATAATTGTGG CTTTGGTGAA ACGGCCACCA ATAACTGTAC TAATGATTTC
GAACAAACCA ATGTTCGCGC CACGGCCAAC TATGCACATG GAGCATCGAA GCATGAGTTT
GCGCTGTCAA AAATGTTTAT TGAGCGCAAC AATTACACGC AAGGCGTGTT CAGTTTTGGC
GCCAAGGGCT ATACAGAAAG AGCGGAGTAT TTAGGTAACA CGGAACTGAA TCAAGACTCT
AGCTTAATTT ACGGTATTGA CTGGGAAAAA GAAGCCATTA CCAGTACCGA TGACGCGCGA
ATTCAGCGAG GTTATTATCT TGAATACCAA AGTGAAGTAC TGAAAGACTT TTTCATTACC
GCAGGTGTGC GCCATGACGA CAACGAAGAT TTCGGCGAGC ACACGAGCTA TCGGTTAAGC
AGTGCTTATA TTTGGACAAT CGGTGAGAAC GAACTCAAAC TGCGCGGGGC CTACGGTACC
GGTTTTAGAG CGCCAAGCTT ATACGAAATC GGCTATAACG CTGGGCCTTT TGCTAGGGCA
CCAGCCACTG ATACTGCATT AAAAGAAGAG ACCACCAAAG GCTATGAGGT TGGCCTAACC
TACTCTTTGG CCTCTGGCTC ACAGTTTGAA GCCACTTACT TTGATCAAAA GATAGAAGAC
AGCATTTACT TTGATCTCGC CGCTTTTTCG GGTTACTTAC AAGACTTAGG CGAAAGCTCG
TCCAAGGGTA TCGAGCTCAT TGCAGACGTG CTTGTTACCG ATACTATTGG TGTCACCGCT
AATTATACCT ACAACGATAC TGAAGATACC GCTGGTGACC AGCGCCGCCG TCGCCCCCGT
AACTCAGGTA GCGTCAGCGT GTATTACGAC AATAACACGT GGAAGTTAGC CGCTAGCCTG
CGCTCATCTC ATGATTCGGT CGATGGCGTA GCACTCAAAG GCTATGAAGT GATGGATATC
AGCGCACGTT ATACGGTTAA TCAAAATTTA AGCCTGTCAG CGCGCGTAGA AAATGCCTTT
GATGCGAACT ACCAAGATAT TGCAGCTTAT AACACCTCAG GTGCGGCGGG TTACATTGGT
GCTCAGTACC AGTTTTAA
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| Protein sequence | MQHRPLAIAI SLALAVSPAI AQTTDAQAAN STDVASKTDR PLERMVVVSS RVAMPIREIA
TSVSIMTRDE IETRGYINLA DVLRTQPSVT VTGSGSVGSA TSLRIRGEEG YRTLVRIDGV
DVSDPTGTQV GPKFGQIQSS NINRVEILRG SQGLVYGADA GGVINIETAN GVGAPSGHVS
AEYGRYNATN LAADVGGSRD KFDYYVAASD FSTDGFNSLI ADNETPDADG YDNTTLHARL
GYQASDSLKL GFVARSTDAD GKFDNCGFGE TATNNCTNDF EQTNVRATAN YAHGASKHEF
ALSKMFIERN NYTQGVFSFG AKGYTERAEY LGNTELNQDS SLIYGIDWEK EAITSTDDAR
IQRGYYLEYQ SEVLKDFFIT AGVRHDDNED FGEHTSYRLS SAYIWTIGEN ELKLRGAYGT
GFRAPSLYEI GYNAGPFARA PATDTALKEE TTKGYEVGLT YSLASGSQFE ATYFDQKIED
SIYFDLAAFS GYLQDLGESS SKGIELIADV LVTDTIGVTA NYTYNDTEDT AGDQRRRRPR
NSGSVSVYYD NNTWKLAASL RSSHDSVDGV ALKGYEVMDI SARYTVNQNL SLSARVENAF
DANYQDIAAY NTSGAAGYIG AQYQF
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