Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1109 |
Symbol | |
ID | 4173638 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1337108 |
End bp | 1338571 |
Gene Length | 1464 bp |
Protein Length | 487 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054115 |
Product | cold-shock regulated carbon starvation protein A |
Protein accession | YP_660689 |
Protein GI | 109897434 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0159914 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCATTT TTTTTATTTG TATCACTATC TTGATCCTCG GTTATAAGTT TTATAGCCCC TTTGTTGAAA AACAAGCAGG GATCGACCCC ACGGTTGCCA CGCCACAAAC TCGCTTTAGC GAAGGCGTGG ATTATGTGCC TATTCACCCG GTACGTGCGT TTCTGATTCA GTTTTTGAAC ATCGCCGGTG TTGGGCCTAT CTTCGGGCCG ATATTAGGTG CTTTATACGG TCCGGTCGCA TTAGTGTGGA TTGTGATTGG TAATGTGTTA GGCGGCGCTG TGCATGATTA TTTCTCAGGT GTGATGAGCA TCAAAGAAGA TGGCAAGAGT CTGCCTGAGA TTGCTGGGCA CTATTACAAT GTGGTCTTTA AGGGATTCAT GTTGATATTT ACCGCTATGC TCTTATTTTT TGTGGGGGTG GTGTTTATCA TGAGTCCGGC GGGTCTATTA AGTAACTTAG ACTCGTTTCA AGGGACCATA TTGGCGGACA ATACCTTCTG GGTATTAGTG ATTTTGGGTT ACTACTTTTT AGCGACCTTG TTACCTATCG ATAAAATTAT CACTAAGTTT TACCCAATCT TTGGTTTATT GATGATTGTA ATGACCAGTA TGATTGCCGT GGCCCTACTT ATTGATGCGC CGCACCTGCC GGTTACCGGC GATTTCTGGG CATACTTCGA AGCGGATCAT GCCCATGATT TCTTAGCTCC TAATCCTGAT GGGTTGCCGA CTTGGCCCCT GTTATTCGTT ACTATCACCT GTGGTGCGAT CAGCGGTTTT CACTCTACCC AAGCCCCTAT TATTGCCCGT TGTTTAACTA ACGAAAAGTA CGTGCGTCCA GTTTATTATG GCGCCATGGT GTGTGAAGGT ATAGTGGCCT GTGTTTGGGC TCTAGCAGGT ATCGCGGCCT TCCCCGAAGG ATACGCTGGT CTCAAAGCTA TGCTTGATAC AGGCGGACCA GGTTTGGTCG TTAATCATGT AGCCAATAGT TACTTAGGTG TATTTGGCGG AATCATGGCT ATTGTTGCGG TCGCGGTGTT CCCGATCACT TCTGGTGATA CAGCGTTTCG CTCGCTTCGT TTGACGGTGG TTGACGCGTT TAACATTCCC CAAAGTATCC GTAACCGCTT GTTGCTAGCA CTGCCTATTT TGACCATTGC CTATTTTATG ACAAAGTTAG ACTTCACGGT GATTTGGCGT TACTTCGCGT TTTCCAATAT GTTGCTTTCA ACCAGCGTGT TGTGGTTAGC GACCAAGTAC TTGTTTGACA GAGGCACCTT CCATTGGATT GCGAGTATTC CAGCTGTGAT CACCACTGGC GTTACCATTT CTTATATTAT GACTGCGGCT ATCGGCTTTA ACTTATCACC AGATTTAGGC AGGCCAATCG GTGCAGTTGT GGTGGTGATT GGTTTGATTT TGTTAGTGCT AGCACATAAT AAACATAAAC AGGTTGCGGC TTAA
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Protein sequence | MIIFFICITI LILGYKFYSP FVEKQAGIDP TVATPQTRFS EGVDYVPIHP VRAFLIQFLN IAGVGPIFGP ILGALYGPVA LVWIVIGNVL GGAVHDYFSG VMSIKEDGKS LPEIAGHYYN VVFKGFMLIF TAMLLFFVGV VFIMSPAGLL SNLDSFQGTI LADNTFWVLV ILGYYFLATL LPIDKIITKF YPIFGLLMIV MTSMIAVALL IDAPHLPVTG DFWAYFEADH AHDFLAPNPD GLPTWPLLFV TITCGAISGF HSTQAPIIAR CLTNEKYVRP VYYGAMVCEG IVACVWALAG IAAFPEGYAG LKAMLDTGGP GLVVNHVANS YLGVFGGIMA IVAVAVFPIT SGDTAFRSLR LTVVDAFNIP QSIRNRLLLA LPILTIAYFM TKLDFTVIWR YFAFSNMLLS TSVLWLATKY LFDRGTFHWI ASIPAVITTG VTISYIMTAA IGFNLSPDLG RPIGAVVVVI GLILLVLAHN KHKQVAA
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