| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1069 |
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| Symbol | |
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| ID | 4172855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1279741 |
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| End bp | 1282479 |
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| Gene Length | 2739 bp |
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| Protein Length | 912 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054075 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_660649 |
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| Protein GI | 109897394 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3405] Endoglucanase Y |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACTT TATCAGTCAG CAATACAGTG AGCAGTGCCC CCAGCGGGAA AACGGTTTCT
TTGAGCAAGA GCGTCGCATT AGCACTAGGA ACTCTGCTCT TAACATCTTT CAGTATGCCG
TCATATGCTG AAGTGAGCAT TGATCACTTA ACGCTAACAA ACAAAACGCG GATAGGGCGA
AGTGATTACC GGTACGAGTT TTCGGTGTTC GTTAAAAATG ACGCCGAGCG CGTTCAAGAT
GTACAAATAG ACGTGACTTC GAGTAACCCT CATTCACGAA TAGAATCTTC TGGTGTCAGT
CTTATAGAAA TACCCGCGAA CAGCGTGCTT GAGCTAACAG AGCCGTTCGT ACTAGTCCAA
AACCGCCGAG CACGATTCAA TGAGCAGGAC TTAAGTTGGG TTATCGACTA CCAGCAAAGC
GGCAATGCCA TTAGCGATGA CTTTTCGCCG AACGCTGCTT ATCACACGGG TGAATATAAA
AATTTCTTTG TTGAGCGTGG CTTAGCAACC CAAGAACAAG TCACCGCAAA AATTGATGCC
ACCTATCAGC AATTGTTCGA ATTGGTGCCC GACCAAGCTC TACCGCAGCC CAGTAAAGGA
GAACGAATTT ACCATGCAGG TTTTGATGAC AGTATTGATA ACTGGCAGTG GCATGCGGAT
AACGGTTCGC AGGTTGGGGC GACACTTTCT CAACACGGGG GAGCTTTAAT TATCACGCCA
AATTGGCAAA GCGGCGGTGA CGCGCTCGCG GTTCTTTCAA GCTCGTTTGA GCCCATTGAT
GCAACGCAGG GCGTTGATGT TGAATACAAA ATGGCTGTTG ATCAAGCCTA CGCTGATGAC
GGTGCTATGG CGGCGCAGCT CTTTATTCAA GACTCATCTG GCGGAATAGG CTTTTTTGCG
TATCGTACAT TAACCCAACC TGATGAAAGC ACCATTTTAG TCAAAGATTT AGGGCCTGAT
ACGAATTTCG GTTACTTATC TGAAGGGTTC GACTTTAGCC AAATCAGCAC CTTAGGGTTT
CAGTTTTTAG CAAATGGAAA AAGTGCCGAT ATTGGTGGGG ATATCACCGT TTCAGAAGTA
AGCGTTTACC AACCAGTTGG TGGCTCAGAA ACAGATAACA GCCCTAGTTT CTTAGATTCA
TTCGACCATG GTATTGCACA GTGGAATGCG GGCGCGAACA ATGGGAGTGC TATTGAGCCA
GCGCTGACAG TGGGCAATGT GATAGGCGGC GATGGCCAAA GTAATAATGT GTTATTAATT
AGCCCGAATT GGCTCAGTGA TAGTGACGTA TTTACCGTTA AATACCAACA GTTCGCCGCG
GTTGACATCA CGGACGGGCG CGATATCAGT TTCGACGTAA AGATACCCGC TAATTACGTA
GTAGACGGCA ACTTAGTCGT GCAACTCGTG CTAGAAGATG CCAATTATCA ACCGGCCTTT
TTGGGCTACA TCAAGGTAGA TGGATTCCCT AAAGATGAAT TTATCACCCT CAGTTTTAGC
GATGTTAGCG CTGCCACTGA ATTTGGCTAT ATCAGTGACA GTTTTGATTT TAGCCAACTG
CGGGGCATAG GTGTGCAGTT TTTGGCAAAT GGTAAACTGC CCGAACTGAC CGGTGATATC
CAAATAGACA ATGTCCTCGT CGCGGGGCAA GCGCCTAGTG AGCCGGCACC TGAACTATCT
GATACCACAG TGCTGTATGG TGTGGGTGAT GACATGGCGT TCATCAAGGC GATTGATTCA
AACGATATTC GCTCTGAGGG CATGTCTTAC GGCATGATGA TCTCTGTGAT GATGGACGAC
CAAGAAACCT TCAACAAGCT GTGGCGATTT ACTAAAGCTA AAATGCAAAA TACGTCCGGC
AATAGCAAAG ACTTTTTCGC GTGGCGACTC AGTGCCAATG CTCCTTATAA TGCGATTGAT
ACCAACCCTG CACCAGACGG CGAAGAGTAT TTTGCAATGG CACTATTTTT TGCGAATAAC
CGCTGGGGGA GTGCTGATGG TATCTTTGAT TATCAACGAG AGGCAAATGA CATACTCCAC
GATATGATCT TCACCAAATC TGATAACAGC AGCACGCGGC TTATGATGCA TCCCGTTTAT
CAACAAGTTG AATTTGTGAC GACGACCAAT GTGGCGAGTT TCTCCGACCC TTCATATCAC
CTACCGGCTT TTTACGAAAT GTGGGCGTTG TGGGCGGATG AAAACAACGA TTATTGGCAC
GAGACCGCTG CCATCAGTCG TCAGTATTTG GCGAAATCAG CTCATCCAGT TACGGGCCTA
TTCAGTGACT ATGCTAATCA CGAAGGTGAG CCCCAGACGA CTAGCTTTAA CCCTGATAGT
CACAAAAGTG CCTACGATTC ATTTCGAGTG ATGGGCAATA TGGCCATGGA TTATCACTGG
GTAAGTCAAT CACCTGTTCT GCAGTCTCTG GTCGAGCAGC AAGTTACCTT TTTTGCAGGC
GAAGTTGAGC AGTACGGTGA TTTCATTGCT GTGTATGAGG TCGACGGAAC ACGTGAGCCT
GGTATCGATT ACCGTAGTCA TGGTCGCACT GCAATGAATG GGGTAGGAGC CACAATAAGC
GAAAACCCGT TTTCTACCGA AATGCTGAAT TACTTATGGC AACAAGACGC GCCCACAGGA
ATGTATCGCT ATTACGATGG GCTACTGCAT ATGTTTGGGT TATTGCACGC AGGAGGCGAG
TTTAAAATCT ATAAGCCAAA TGAAAACGAG CCTGAATAA
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| Protein sequence | MSTLSVSNTV SSAPSGKTVS LSKSVALALG TLLLTSFSMP SYAEVSIDHL TLTNKTRIGR
SDYRYEFSVF VKNDAERVQD VQIDVTSSNP HSRIESSGVS LIEIPANSVL ELTEPFVLVQ
NRRARFNEQD LSWVIDYQQS GNAISDDFSP NAAYHTGEYK NFFVERGLAT QEQVTAKIDA
TYQQLFELVP DQALPQPSKG ERIYHAGFDD SIDNWQWHAD NGSQVGATLS QHGGALIITP
NWQSGGDALA VLSSSFEPID ATQGVDVEYK MAVDQAYADD GAMAAQLFIQ DSSGGIGFFA
YRTLTQPDES TILVKDLGPD TNFGYLSEGF DFSQISTLGF QFLANGKSAD IGGDITVSEV
SVYQPVGGSE TDNSPSFLDS FDHGIAQWNA GANNGSAIEP ALTVGNVIGG DGQSNNVLLI
SPNWLSDSDV FTVKYQQFAA VDITDGRDIS FDVKIPANYV VDGNLVVQLV LEDANYQPAF
LGYIKVDGFP KDEFITLSFS DVSAATEFGY ISDSFDFSQL RGIGVQFLAN GKLPELTGDI
QIDNVLVAGQ APSEPAPELS DTTVLYGVGD DMAFIKAIDS NDIRSEGMSY GMMISVMMDD
QETFNKLWRF TKAKMQNTSG NSKDFFAWRL SANAPYNAID TNPAPDGEEY FAMALFFANN
RWGSADGIFD YQREANDILH DMIFTKSDNS STRLMMHPVY QQVEFVTTTN VASFSDPSYH
LPAFYEMWAL WADENNDYWH ETAAISRQYL AKSAHPVTGL FSDYANHEGE PQTTSFNPDS
HKSAYDSFRV MGNMAMDYHW VSQSPVLQSL VEQQVTFFAG EVEQYGDFIA VYEVDGTREP
GIDYRSHGRT AMNGVGATIS ENPFSTEMLN YLWQQDAPTG MYRYYDGLLH MFGLLHAGGE
FKIYKPNENE PE
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