| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0865 |
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| Symbol | |
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| ID | 4173714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1018873 |
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| End bp | 1021362 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053868 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660447 |
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| Protein GI | 109897192 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0714067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTAA AAAAGCTATC TTTATATTTT CCGCTTCTGG CATTTTCAGC ACTATCACTT
CAAACTACAG CTCAAGAGAC TGTAAACCAA GAAGCAGAGG CTGACGAAAG CAATGCCATT
GAAACAATTA TGGTTACAGC TCAACGCAAG TCTCAGTCAT TACAGGACGC GGCTGTACCA
ATGTTGGCGG TCAATCAGGA TTCACTGACT CGTCAGGGTC TTGATTCTGG TCAAGACCTA
GGAAGGCTTT CCCCTTCATT AGGGATAAGT CCTGGTGGTG GCCCACTGAC AAGTATTTTT
GTTCGTGGCG TAGGGGCGTT GACCGTCAAT CCTTTGACTG ACGCCGCTGT TGCGCAGAAC
ATCGATGGGG TTTATCTAGG GCGCTCTAGT GGTGCCGCGG GACAAGCGCT TTTCGATTTA
GAGCGGGTAG AGGTTCTAAA AGGGCCTCAA GGTACCCTAT ATGGACGAAA CGCGACGGGC
GGTGTTGTTA ATTACATCCC TGAAAAACCC CAGTTACGTG AAACTTCAGG TTACGCTCAA
GTTGAAGCAG GTAATTATTC AAGATTAGGC TTCCAAGGCG CTTACAATGC ACCGCTTGGG
GATGATGCTG CTGTGAGATT CTCGGTTAAC TCATTGCAAC GCGATGGTTA CTCTGACGAT
GGCACTAACG ATGCCGATAC GTTTGCCATT CGAGCTCAAG TTTACTTTGA ACCTTCTGAT
GAATTTAACA TTCGTTTTGC CGCAGATTAT TCTGAAAATT CAGGGATAGG CCAAGGCGGT
GACCTGATAG GTACGTTTAG TAATGACTCG GGTAGCCTAA CTGATTTTAC TCCTTCAGGA
ATTGAACTTT TTTCTGGCCC TACCTCAGAT GCAGCTAACG ACATTCGAAC GGGTGTGCTG
CACACGCCAT CGTTTGCACC ATACAAACCG TTAAGTATTG ACGATTTAGG TCAGGATCTT
TCATTTACAG GCTTGATGGT TGAACTAAAT TACACGACTG AATCAGGTAC ATTCAGTGTG
ATCCCCGCGT ACAGAAAATC AGATCAAGTG TACACATTTG TTGGTCCCGG ATTTGCCCCC
GCTAAAACGA GCGAGGAAAA TGAGCAAACG AGTTTAGAGG CGCGCTTTAC GACTGATTTC
GAAGGTCCCT TTAATGGTAT TTTGGGCGCA TTCTATTTTG ACGAAGAAAT TCAAACCAGT
GGCGTGTTCG CGCAAAACTA TGCCTCGCCC ATCCAAAATT ATGAGAATGG TGGCGACTCG
TGGGCTATAT TTGGTCAGGG AACATATGAC ATATCGGAAA CTTTCCGTAT AAATCTAGGT
TTGCGTTACA CCGAAGATAA AAAGTACGTT GAGGGTATCA GTGATACCTT TGTGACCTTC
TGTGGTGGTA CACCGGCAAG CGGCGATTTT CTGACTCCGC CAGCAAGTTT TGGTAACGGT
TGTGCCTCTG GCGCTATACC AGCTCACCCT ATCACTTCAG ATCGAGACGA ATTTATTGCC
TACTTTGTAA ATGAAGGATT AATTGCACCA GACTCAGTTG CCACTATTCC CGGCATGGGG
CCTCCTCCAG CTTATCCCTT TACCATTCCA GGTAATATTT CCCCTCAAAT CGCGACAATA
GCAAATGTGG GCGAAGGTTT TATACAGGCA GACTTAGATT ACAGCGAAAC GACATACCGA
ATTGGCTTAG AGTATGACGT GGCCAAAGAC AATTTATTGT ACGCAACGTT CGAAACAGGT
TATCGCGCAG GTGGTGTAGA TTTATCTGCC GTATCGCCTA CCTATGACCC AGAGTATATT
GATGCATTTA CCATCGGTTC GAAAAATCGC TTTTTAGACA ACACCCTTCA ACTTAACTTA
GAAGCATTTC ACTGGAAGTA TGATGGGCAG CAAGTTACTT ATTTCACTAC ATTAGATAGC
GCATCGTCGT TTCCGATTGC TAATGGTGAC TCAACCATAC AAGGTTTAGA TGTAGATATG
ATTTGGGCTG TTGGCCAAAA CACGACGATA AGTGGTAATG CGCAATTCCT AGATTCGACC
TACGACTCGC TGACGTTGGT ATCGGACCCT GGACAAGGTC GGTTTGGATG TGCATCAACA
GGTGTAACAG GTGCAATCGA AAACTACGAT TGTTCTGGAG AAAGCTTATT GTATTCTCCT
GATTTCGGTG CCGGAATGGC AATAAACCAT CATATTGAGT TTGACGAATA TAATTTGTCC
TTGACTGCAC AGGCGTCTCA TCGTTCTGAG CAAGAAACTA ATTTCTTGTT TGTCGATGCG
ACAAAAGCAA AGTCTTACAC AACGCTAGAC TTAGATGCCA CGCTTATGTC TGCCTCAGGC
GATATTAACT GGGCTATATC TGTGTTTGTT CGCAATGTGA CCGATGAGAT ATTTGTGGCT
AACTCTAATG TCAACAACCG AGGGCTAACG TACGCTATTC ACAATCCACC TCGTACCTTT
GGAATTCGTT TAAAAGCAGA CTTTTATTAG
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| Protein sequence | MKLKKLSLYF PLLAFSALSL QTTAQETVNQ EAEADESNAI ETIMVTAQRK SQSLQDAAVP
MLAVNQDSLT RQGLDSGQDL GRLSPSLGIS PGGGPLTSIF VRGVGALTVN PLTDAAVAQN
IDGVYLGRSS GAAGQALFDL ERVEVLKGPQ GTLYGRNATG GVVNYIPEKP QLRETSGYAQ
VEAGNYSRLG FQGAYNAPLG DDAAVRFSVN SLQRDGYSDD GTNDADTFAI RAQVYFEPSD
EFNIRFAADY SENSGIGQGG DLIGTFSNDS GSLTDFTPSG IELFSGPTSD AANDIRTGVL
HTPSFAPYKP LSIDDLGQDL SFTGLMVELN YTTESGTFSV IPAYRKSDQV YTFVGPGFAP
AKTSEENEQT SLEARFTTDF EGPFNGILGA FYFDEEIQTS GVFAQNYASP IQNYENGGDS
WAIFGQGTYD ISETFRINLG LRYTEDKKYV EGISDTFVTF CGGTPASGDF LTPPASFGNG
CASGAIPAHP ITSDRDEFIA YFVNEGLIAP DSVATIPGMG PPPAYPFTIP GNISPQIATI
ANVGEGFIQA DLDYSETTYR IGLEYDVAKD NLLYATFETG YRAGGVDLSA VSPTYDPEYI
DAFTIGSKNR FLDNTLQLNL EAFHWKYDGQ QVTYFTTLDS ASSFPIANGD STIQGLDVDM
IWAVGQNTTI SGNAQFLDST YDSLTLVSDP GQGRFGCAST GVTGAIENYD CSGESLLYSP
DFGAGMAINH HIEFDEYNLS LTAQASHRSE QETNFLFVDA TKAKSYTTLD LDATLMSASG
DINWAISVFV RNVTDEIFVA NSNVNNRGLT YAIHNPPRTF GIRLKADFY
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