Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0767 |
Symbol | |
ID | 4173945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 875474 |
End bp | 878125 |
Gene Length | 2652 bp |
Protein Length | 883 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053769 |
Product | TonB-dependent receptor |
Protein accession | YP_660349 |
Protein GI | 109897094 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000108797 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAATGA AAATATCCAA GTTAAGCTGC GCGGTCGTTG CCGCACTTGC TACTACGCCC GTCTATGCTC AGCAAGAAGC CGCAAAAACA GGCAAAGCGA GTATTGAGAC TATTGAAGTA ACTGCAACAA AACGCTCAGA GTCGATTCAA GACATTCCCG TGTCAGTGAC CGCACTAAAC GGTGAAGCAT TAGAGAACCT TGGGGTTGAT AATTTTCAAG AATACGTCGA GTTCTTGCCT AATGTGACCT TTCAGGGTAC AGGCCCTGGA CAAAACGAAA TTTACATTCG TGGCGCAGCA ACGACCCAAA GTAATATCTC TGTTTCATCT GTGCAGGCAC TTCAGCCTTC TGTCGCGTTT TACCTGGACG AACAACCGGT TTCAATGCAG GGCCGTAATC TAGATATTTA CGCTACCGAT ATGCAGCGCA TTGAGGTACT ACCTGGGCCA CAAGGGACCT TGTTTGGTGC CAGCTCACAA TCAGGCACCG TAAGATTGAT CACCAAAAAA CCTGATCACA CTGGATTTGC TGCAGGGGTT GATACCAGCA CCAGTTTCAC TAAAGGTGGT GAAATGAGTA ATTCTGTAGA AGGGTTTATA AACTTCGCAG TATCAGACGA CCTTGCCTTT CGCGTAGCGG CCTACACTGA TAACCAAGGC GGTTGGATTG ATAACATCCG CAACGATCCA GCGAATGGCG GATACATCGG TAGCGCAGTG GTTATCGACA GAATCTCTGG CGGTGTGCTT AGCGACCCTG AAAATACTCC GGTGATTTCA CCTGAAAACG ATGCGTTAGT GGAAGATGAC TTTAACGATG CGGTTTATTC AGGTGCGCGT TTTGGTCTGT CTTACATTAT TAATGAAGAT TGGGACTTAT TGGTTCAACA CACTCAGCAA ACATTGAGCA CTGAAGGCGT GTTTGCATAC GATCCTAATT TAGAAAGGGA AACCTCAACT AACCGCTTTG TACCTGAAGA CAATGATGAC GAGTTTGGTT TGACTACTTG GACCTTAGAA GGGCGTTTAG ACAAACTAGA CATCGTTTAC ACTGGGGGAT ACTTAGACCG CTCAATCGAC TCAACCATTG ATTACACGGG TTATACCAAC GGCGGTTTAT TCTCTGCTTA TTATGTGTGT AATTATGGTG GAGATGTTGC GCCAGAAGAT GAGATTTGCT TAGACCCAAC TAAGTATTAC AAGGAAAAAA CCGACAGCAC GCGTATGACC CACGAGTTGC GCTTTAATAC GCCAACAGAC AATGTATGGC GTCTAACTGC TGGTGTATTT TACGATGAGC AAGACCTCAA TTCAGTGGGT AAGTTTAATA TCGCTAATAC GGACAAGTTC GACGATTTAG CCCGAACTTT GGTAGGCTCT GAGGGGGTTA ACTCAACGAG TCAACCCTTT GAGCCGAGCA TCAGTTTCGT AAACGATATT CAGCATGCAA TTGACCAAAT CGCAGTGTTT GGCCAAATAG AATACGACCT GACCGACGAC ATTACCGCAA CGTTTGGTGC TCGCTGGTAT GAAATTCAAG ATACGTATAA AGGCTCCACC ACCACTGTTG ATGTGAGTCG CCGTTTGCGT GCGTTCGGTA CGCAAGATCC AGCTGAATTG GCGGCATCTG GTTTAGATGA TGGTGTGATA GCCGCGATAG AAAGCGGGCA ACTTGAAGTT GATTTACTCG ATGGTGATGG CACATTGACC GTAGACGATG TGATTTTGAA AGCGTCAGTT GACTGGAAGG TAAACGAAGA TATTCTGGTA TTCGCCACCT ATTCTGAAGG CTTCCGTCCG CCTGTAACCA ACCGCGTAGG TGGTGGTTTA GCGACCAATC AAACAGGGGC GTTTGAAGAT TTCCGTATTC CAGTATATTC AACAACGGAT GAGTTAGATA ACTATGAGTT CGGTATCAAA GGTGACTTCC TAGACGGTAT TTTACGTGTT AATGCTACGG CGTACTATTC TGAAATCAGT GACCTACAAA CCTCACGTTA TGACCCAACC AACATCAGCT TCTTGGTATT CACTGACAAT GTTGGTGACG CTGAAATTCG CGGTCTTGAT GCTGACTTAA CCTGGTTGGC CACTGACAAC CTTGTTATCA ACGCGGCGTT TAGTGTGTTA GACACTGAGT TGACGAGCAT TAACGCTGCA CTAGATGGAA TAGCGCCACC TGTGGGCAGT AAACTACCGT ATTCTGCTGA TTTCTCGGGC AATATCCGTG CACAATACTT TTATGAGTTA GACAATGGCT TTACTGGATA TATCAACGGC TCAATTAGCT ACACAGGTGA TCGCTTAGCG AGCATGTCGA TGGACGCCTA TGCTCTTGAA GATGCTGCAC AGCTCGTTTA TGGCGCAGGG ACAGGCCTAA GCATTGAGCG TGAAGCCGCT GTGTACGAAG GCGTAACGTT TGCTGATTCA AACGGTGAGA CCATTCAAGG TGGGCGTTAC ATCCAAGACA GCTACATACT TGCTAACCTT GCATTTGGTA TTACTAACGA TGAATGGAAA GCTGAGATCT TTATTGATAA CCTAACGGAT GAGAGTGCTA TCTTGTATAT TGATGCCCAG CAATACACGC CTAAAATAGT GTCTAACAGA CCACGTACCG TAGGGTTAAG ATTGTCTTAC GACTTCTTCT GA
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Protein sequence | MRMKISKLSC AVVAALATTP VYAQQEAAKT GKASIETIEV TATKRSESIQ DIPVSVTALN GEALENLGVD NFQEYVEFLP NVTFQGTGPG QNEIYIRGAA TTQSNISVSS VQALQPSVAF YLDEQPVSMQ GRNLDIYATD MQRIEVLPGP QGTLFGASSQ SGTVRLITKK PDHTGFAAGV DTSTSFTKGG EMSNSVEGFI NFAVSDDLAF RVAAYTDNQG GWIDNIRNDP ANGGYIGSAV VIDRISGGVL SDPENTPVIS PENDALVEDD FNDAVYSGAR FGLSYIINED WDLLVQHTQQ TLSTEGVFAY DPNLERETST NRFVPEDNDD EFGLTTWTLE GRLDKLDIVY TGGYLDRSID STIDYTGYTN GGLFSAYYVC NYGGDVAPED EICLDPTKYY KEKTDSTRMT HELRFNTPTD NVWRLTAGVF YDEQDLNSVG KFNIANTDKF DDLARTLVGS EGVNSTSQPF EPSISFVNDI QHAIDQIAVF GQIEYDLTDD ITATFGARWY EIQDTYKGST TTVDVSRRLR AFGTQDPAEL AASGLDDGVI AAIESGQLEV DLLDGDGTLT VDDVILKASV DWKVNEDILV FATYSEGFRP PVTNRVGGGL ATNQTGAFED FRIPVYSTTD ELDNYEFGIK GDFLDGILRV NATAYYSEIS DLQTSRYDPT NISFLVFTDN VGDAEIRGLD ADLTWLATDN LVINAAFSVL DTELTSINAA LDGIAPPVGS KLPYSADFSG NIRAQYFYEL DNGFTGYING SISYTGDRLA SMSMDAYALE DAAQLVYGAG TGLSIEREAA VYEGVTFADS NGETIQGGRY IQDSYILANL AFGITNDEWK AEIFIDNLTD ESAILYIDAQ QYTPKIVSNR PRTVGLRLSY DFF
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