Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0724 |
Symbol | |
ID | 4172180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 818799 |
End bp | 820493 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638053726 |
Product | malate dehydrogenase |
Protein accession | YP_660306 |
Protein GI | 109897051 |
COG category | [C] Energy production and conversion |
COG ID | [COG0281] Malic enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAGCT CAGCGCCTAA AAGTGCGTTA TACATTCCTC ATTCAGGCCC TTCTTTGCTT GAAACCCCCT TGCTCAATAA AGGCAGTGCG TTTACTGCCC AAGAACGCGT AGCGTTTAAC CTTACAGGCT TGATCCCCCC ACGTTACGAA AGTATCGAAG AGCAAGTCGA ACGTGCGTAT ATGCAGTATT CAAGTTTCAA CGAACCCATC AATAAGCATA TTTATCTGCG TGCAATCCAA GATAATAACG AGACCCTGTA TTATCGTCTT ATCCAGCAGC ATATTGATGA AATGATGCCG ATCATTTACA CCCCGACGGT AGGGGACGCG TGCGAGCAGT TTTCAGATAT CTATCGTAGC TCTCGAGGAT TGTTTATTTC CTATTCAGAG CGTCATCAAA TGGATGACAT TATTCGCAAC GCCACCAAGC GTAAGGTAAA AGTCATAGTC GTGACGGACG GTGAGCGTAT TCTTGGTCTG GGCGATCAAG GTATCGGCGG TATGGGCATT CCTATTGGAA AACTGTCTTT GTATACCGCC TGTGGTGGTA TCAGTCCCGC TTATACGCTT CCTGTTATGC TGGATGTGGG AACTAATAAC GAAAAATTAC TAAACGACCC TATGTATATG GGCGCGCGTC ATAAGCGTAT TGGCCAAGCG GAGTACGATG AATTTGTTGA TATGTTTATC AAGGCGGTCT TAAAGCGCTG GCCTGAAGTG ATGCTTCAGT TCGAAGATTT CGCCCAGCCT AATGCGATGC CATTACTTGA GCGCTACCGC GATAAAGTAT GTTGCTTCAA TGACGATATT CAGGGCACCG CAGCTGTAAC GGTGGGGACT ATTTTAGCGG CATGTAAAAC TAAAAATGAA AAGCTTAGCG ACCAACGCGT GGTGTTCGTT GGTGCAGGAT CTGCGGGTTG CGGTATCGCT GAGCAAATCA TCAAGCAAAT GACGAGTGAG GGGATCACTG ATGCGCAGGC CCGTAGTCAA GTCTTCATGA TTGACCGGTT TGGTTTGGTC ACAGACGATA TGGAAGGCTT ACGGGACTTC CAATTCCGAC TTGCGCAGCC GTTGGCTAGT CAAGCAACAT GGCAAAAAGC GGCGCAATAT CCGTCATTGT TTGAAACCGT GAGCCAAGTC AAACCCAGTA TTTTAATAGG GGTATCAGGG CAAGCGGGTT TATTTACCGA GCAAGTCATT AGGGAAATGA AACGCAACTG CGATTTGCCG ATCATCTTTC CGTTAAGTAA CCCTTCTCGT CAGGTAGAAG CCCGTCCTGA AAACGTTATT GAGTGGACTG ACGGCGAAGT GATTATCGCT ACCGGTAGCC CATTTAAGCC TGTGGAATAT AAGGGGAAAA CCTACCCTAT CGCACAATGT AACAACAGTT ATATATTCCC AGGAATCGGA TTAGGCGTAC TGGCAGCCAA GGCTAGTTTA ATCAGTGACG AGATGCTGAT GGCCACCAGT GCTGCGCTCG CCAATGCGTC ACCTCTGGCG AATGGTACAG GGCAAGAATT GTTGCCACCA CTGACAGGCA TTGCGCAGCT AAGCAAGAAG ATAGCCTTTG ATGTAGGCAA AGTCGCTCAG AAACAAGGGT TAGCCCTAGA AGTGAGTGAT GAAATACTCA GTGAGCGCAT TGAAGGGAAT TTTTGGCAGG CAGAATACCG CCCGTATAAA CGCGTCAGTA TCTAA
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Protein sequence | MSSSAPKSAL YIPHSGPSLL ETPLLNKGSA FTAQERVAFN LTGLIPPRYE SIEEQVERAY MQYSSFNEPI NKHIYLRAIQ DNNETLYYRL IQQHIDEMMP IIYTPTVGDA CEQFSDIYRS SRGLFISYSE RHQMDDIIRN ATKRKVKVIV VTDGERILGL GDQGIGGMGI PIGKLSLYTA CGGISPAYTL PVMLDVGTNN EKLLNDPMYM GARHKRIGQA EYDEFVDMFI KAVLKRWPEV MLQFEDFAQP NAMPLLERYR DKVCCFNDDI QGTAAVTVGT ILAACKTKNE KLSDQRVVFV GAGSAGCGIA EQIIKQMTSE GITDAQARSQ VFMIDRFGLV TDDMEGLRDF QFRLAQPLAS QATWQKAAQY PSLFETVSQV KPSILIGVSG QAGLFTEQVI REMKRNCDLP IIFPLSNPSR QVEARPENVI EWTDGEVIIA TGSPFKPVEY KGKTYPIAQC NNSYIFPGIG LGVLAAKASL ISDEMLMATS AALANASPLA NGTGQELLPP LTGIAQLSKK IAFDVGKVAQ KQGLALEVSD EILSERIEGN FWQAEYRPYK RVSI
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