| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0667 |
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| Symbol | |
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| ID | 4173322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 769786 |
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| End bp | 771528 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053670 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_660250 |
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| Protein GI | 109896995 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00540746 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAGTC GCCACTTTTT ACATTCCAAA AAATTGCTGT GCGTATTCGC CATTGCACTT
TGCGCTTTAT GGCATTTACC TAGTCTTGCA CAATCTGATG CGGTGCTCGT TGACCCTGTT
GCTGCACTTA ACGAACTGAC CACTAATCAG CTAAATGACA TACAATTTAC CCGCTCAACT
GAAGGGTACG GCGTGGTGAC CTTGAGCTTT AACAATCAGC GAATTGCTCC TCAATTAATC
GCATCGAAGC GAAAATTGAC CCTCACCCTA CCTGACACAA CACTAGCGCC TGATCAGTTC
TTTACCTTAA ATGTGGCGGA ATTTTCCACA CCGATTATAG AAATAGACAC CCTCGCAAGA
AAAGGGGCCA GCGTTTTAGA ATTCAACTTA CTCGAAGATG TGGTGTTCAC CCACAGCAAG
AATCAAAATC AATTAGTGCT GACTATTAAG CCCAAAGCAA CTGAGCAACA ACAAAGTGCT
TCTGTGTATA ACGGCGAGCC CATTTCACTG GATTTCCAAG ATGTACCAGT GCGTAATGTG
TTGCAAATCA TCGCTCAAGT TAATGGCTTT AATCTGGTTA CTACGGATAC GGTACGCGGC
AATGTAACCG TCAGTCTAAA TGGCGTACCT TGGGATCAAG CACTCGATAT GATTCTGAAA
ATTCGCGGCT TAGATAAGCG CTTAGAAGGC AACATACTAC TTATCGCCCC ATCAGAAGAG
CTCGCATCCA GAGAAACCCA GCAATTGCAA AACCGCCAAC AGGTAGCTCA GCTCGCTCCC
CTTATTTCCG CTAATTTACA AATTAACTAT GCAAAAGCCA AAGAAGTAGC CGGTATTTTA
AAGAATACCG ATAGCAGCAT TTTAAGCCCA AGGGGCAGTG TTGCCGTTGA TGAGCGTACT
AACACCGTAT TACTCAGAGA CACGCAAACT TCTATTGATG AAGCGAGAAA GCTCATTCGC
GCACTAGACA TTCCCGTTAA ACAAGTTTTA ATCGAATCAC GCATGGTTAC AGTGCGCGAT
AACGCTGGTG AACAACTTGG CGTACGCTGG GGTTTTAGTA ATAACTCTGG TGACACAGCT
ACATCTGGCT CTATCGAAGG CGCCGATACA CTTAGCAGCG GCGTAGTGCC GTCTATTGAT
AATCGGCTAA ATGTTAATCT TCCCGTTACC AATCCAGCGG GTAGTATTGG CATTCAAGTC
GCCCGCTTAG TGGATGGCAC CATATTGGAT TTAGAATTAT CCGCCCTTGA ATCTGAAAAC
AAGGGTGAAG TTATTGCCAG CCCGCGTATT ACGGTGGCTA ATCAACGTGA AGCCTACATT
GAGCAAGGGA CCGAAATACC TTACGTACAA TCCACGTCTA GCGGTGCTAC GTCCGTCGAG
TTCAAAAAAG CGGTACTGAG TTTAAAAGTC ACTCCACATA TCACCCCGGA TCATAGAATT
ATTTTGGACC TTGTCGTTAC CCAAGATACT CGAGGAGACA CAGTCAATAC CTCAACGGGT
TTAGCCGTCG CGATTGATAC CCAAGAAATC AGCACCCAAG TACTGGTCAA TAACGGGGAA
ACTATCGTAC TTGGGGGCAT TTTTCAGCAG ACGACAACTG ATGATGTAAG CCAAGTTCCG
CTACTTGGGG ACATCCCAGT CCTTGGACAT CTGTTTAAAA ACACCCAAAC CGTCAATGAA
AAGCGTGAAT TGCTGATTTT TGTCACGCCT AAAATATTGC TTGATGACCT AGCTCTAGAA
TGA
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| Protein sequence | MASRHFLHSK KLLCVFAIAL CALWHLPSLA QSDAVLVDPV AALNELTTNQ LNDIQFTRST
EGYGVVTLSF NNQRIAPQLI ASKRKLTLTL PDTTLAPDQF FTLNVAEFST PIIEIDTLAR
KGASVLEFNL LEDVVFTHSK NQNQLVLTIK PKATEQQQSA SVYNGEPISL DFQDVPVRNV
LQIIAQVNGF NLVTTDTVRG NVTVSLNGVP WDQALDMILK IRGLDKRLEG NILLIAPSEE
LASRETQQLQ NRQQVAQLAP LISANLQINY AKAKEVAGIL KNTDSSILSP RGSVAVDERT
NTVLLRDTQT SIDEARKLIR ALDIPVKQVL IESRMVTVRD NAGEQLGVRW GFSNNSGDTA
TSGSIEGADT LSSGVVPSID NRLNVNLPVT NPAGSIGIQV ARLVDGTILD LELSALESEN
KGEVIASPRI TVANQREAYI EQGTEIPYVQ STSSGATSVE FKKAVLSLKV TPHITPDHRI
ILDLVVTQDT RGDTVNTSTG LAVAIDTQEI STQVLVNNGE TIVLGGIFQQ TTTDDVSQVP
LLGDIPVLGH LFKNTQTVNE KRELLIFVTP KILLDDLALE
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