Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0632 |
Symbol | |
ID | 4173654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 731253 |
End bp | 732002 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638053635 |
Product | short chain dehydrogenase |
Protein accession | YP_660215 |
Protein GI | 109896960 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAGAA AGAATATCGT TATTACCGGT GCTAGTTCTG GCCTAGGAAA AGGCATGGCC ATTGAATTTG CTAAAATGGG CCGAAACTTA GGTCTGTGTG CCCGCCGCGT AGAACGTCTA GACGAACTAA AAACCGAATT ACTGGCGATT AACCCTGATA TCAATGTCTT CATTCGCCCT TTAGACGTGG ACGATCATGC ACAAGTGTTT GAAGTCATTA AAGGGTTTGC CGCAGATATG GGCTCCTTAG ACAGAGTAAT AGTTAACGCT GGCATGGGCA AAGGTGCCTC GGTAGGTACG GGGTATTTTC ATGCCAATAA ACAAACCGCG GTAACTAACT TTGTTTCCGC ACTGGCACAG TGCGAAGTCA GCATGGAGAT TTTCCGTGAA CAAAATGCGG GTCACTTAGT TACCATTTCA TCGGTCAGTG CCGTTCGCGG TGCGCGCCGA GCGATGACGG TGTACGCGGC GACTAAAGCC GCGCTTACCT CCATGACCGA AGGTATTCGC ATCGATGTTA TGAACACCCC CATTAAAGTC ACGACAATTC ACCCTGGGTT TATTCAAAGT GAGATAAACG AGAAAGTGAA AACGGTGCCG TTTATCGTCG ATACTGAGAC CGGCTGTAAA GCCATGGTTA AGGCCATTGA AAAAGAAGTC GATAGCAGCT TTGTGCCAAC GTGGCCTTGG GCACTATTTC GCTACATTGC TCGTATTGCA CCGCTCAGCG TATTGGCAAA AATGAGTTAG
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Protein sequence | MTRKNIVITG ASSGLGKGMA IEFAKMGRNL GLCARRVERL DELKTELLAI NPDINVFIRP LDVDDHAQVF EVIKGFAADM GSLDRVIVNA GMGKGASVGT GYFHANKQTA VTNFVSALAQ CEVSMEIFRE QNAGHLVTIS SVSAVRGARR AMTVYAATKA ALTSMTEGIR IDVMNTPIKV TTIHPGFIQS EINEKVKTVP FIVDTETGCK AMVKAIEKEV DSSFVPTWPW ALFRYIARIA PLSVLAKMS
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