| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0525 |
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| Symbol | |
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| ID | 4173509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 611290 |
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| End bp | 613011 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053527 |
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| Product | Na+/solute symporter |
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| Protein accession | YP_660108 |
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| Protein GI | 109896853 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTTC AAGTACTCAC ATTTTTAATC GTAGGAGCTT CTTTTGCTCT GTACATCGCT
ATTGCGATTT GGGCTCGCGC TGGGTCAACA CAAGAATTCT ATGTAGCTGG TGGCGGTGTT
CACCCTATAG CAAACGGCAT GGCAACAGCC GCTGATTGGA TGTCAGCAGC ATCGTTCATA
TCAATGGCTG GGTTGATCTC ATTTATGGGC TACGACGGGG CTGTATATCT ACTCGGCTGG
ACTGGCGGAT ACGTACTATT AGCCCTTTGC TTAGCGCCAT ATTTACGTAA GTTTGGGAAG
TTTACGGTTC CGGATTTCAT CGGCGATCGT TACTACTCAC AAACCGCGCG TACAGTGGCT
GTTGTATGTG CCATATTCGT TTGCTTCACA TATGTCGCAG GCCAGATGCG TGGGGTCGGT
GTGGTGTTTA GCCGCTTCCT TGAAGTCGAC ATCGTTACGG GTGTTGTGAT TGGTATGGCG
ATTGTGTTCT TCTATACTGT GCTAGGTGGC ATGAAAGGCA TTACTTACAC TCAAGTCGCG
CAGTACTGCG TGCTTATTTT CGCTTACTTA GTACCCGCCG TATTTATCTC CATCATGGTC
ACGGGGCACG TACTGCCGCA AACCGGCTTT GGTGCGAGTT TAGCCGATGG GTCGGGGGTG
TATCTGCTGG AAAAACTAGA TGGTCTCTCG ACACAACTAG GATTCAACGA GTACACCTCC
GGTACCAAGG GCACCTTCGA TGTATTTTGC ATCACGGCAG CACTCATGGT CGGTACTGCA
GGTCTGCCCC ATGTAATAGT GCGCTTCTTC ACCGTACCTA AAGTACGTGA TGCGCGTAAG
AGTGCTGGTT GGGCTTTACT GTTTATCGCT ATTTTATATA CCACAGCCCC TTCTATTGCC
GCATTTGCGC GAGTTAATAT GATTGAGACC ATCAATGGTC CAACCGTCAG CGAGCAAGCG
CCCACTGGTA CGCCATATAG CGAAGCTCCT AGCTGGATAA CTAATTGGGA AAAAACTGGG
CTGATTAGCT GGGATGACAA AAACCAAGAC GGTAAAATGT TCTACTCAGG TGATGAGCGA
AACGAGATGC AAGTAGATCG TGACATTATG GTGATGGCCA ACCCTGAAAT TGCCAATTTA
CCGGCATGGG TTATTGCGTT GGTCGCTGCA GGTGGTATTG CTGCCGCATT ATCAACCTCC
GCCGGGCTGT TATTGGTTAT CTCTACATCG GTCTCACACG ATTTGCTTAA ACGCAACCTA
ATGCCCAACA TAACCGACAA AAAAGAGCTG TTTTATGCGC GCTTGGCTGC GGGCGTAGCG
ATTGTTATTG CAGGATACTT TGGGGTCAAT CCCCCTGGAT TTGTCGCGCA GGTGGTCGCA
TTCGCATTCG GCTTAGCAGC TTCGTCATTC TTCCCTGCCA TCATAATGGG AATATTTATG
AAGCGTATGA ATGACAAAGG GGCGATTTCT GGCATGTTAG CGGGGATTGG CTTTACCGCA
GCGTACATTA TTTACTTTAA GTTTGTTAAC CCTGCGGCGA ATGTGTCAGA GAACTGGTGG
TTTGGCGTTT CACCTGAAGG AATAGGTGCA ATTGGTATGT TGGTGAACTT CGCCGTGGCG
TTATTAGTAT TCAAAATGAC GGAGGAAGCA CCACAAGAGA TTCAACAGTT AGTAGAAGAT
ATTCGCTATC CTAAAGGTGC TGGAGATGCA ACTGCACATT AA
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| Protein sequence | MDVQVLTFLI VGASFALYIA IAIWARAGST QEFYVAGGGV HPIANGMATA ADWMSAASFI
SMAGLISFMG YDGAVYLLGW TGGYVLLALC LAPYLRKFGK FTVPDFIGDR YYSQTARTVA
VVCAIFVCFT YVAGQMRGVG VVFSRFLEVD IVTGVVIGMA IVFFYTVLGG MKGITYTQVA
QYCVLIFAYL VPAVFISIMV TGHVLPQTGF GASLADGSGV YLLEKLDGLS TQLGFNEYTS
GTKGTFDVFC ITAALMVGTA GLPHVIVRFF TVPKVRDARK SAGWALLFIA ILYTTAPSIA
AFARVNMIET INGPTVSEQA PTGTPYSEAP SWITNWEKTG LISWDDKNQD GKMFYSGDER
NEMQVDRDIM VMANPEIANL PAWVIALVAA GGIAAALSTS AGLLLVISTS VSHDLLKRNL
MPNITDKKEL FYARLAAGVA IVIAGYFGVN PPGFVAQVVA FAFGLAASSF FPAIIMGIFM
KRMNDKGAIS GMLAGIGFTA AYIIYFKFVN PAANVSENWW FGVSPEGIGA IGMLVNFAVA
LLVFKMTEEA PQEIQQLVED IRYPKGAGDA TAH
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