| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0229 |
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| Symbol | |
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| ID | 4171716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 271615 |
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| End bp | 272310 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053228 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_659815 |
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| Protein GI | 109896560 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACTG TGCTTGTCAC AGGCGCTAAC CGTGGTTTGG GTTTAGGGCT ATGCCAGCAA
TATTTTTCAC AAGGGGATGT GGTTATCGGC GTCTGCCGTG CAAGTGCTGA TCAAACAGAC
TTACTCGCGT TAAAAGCGCA AAATGAAGAT AGGATGCACA TCATGCACGC TGATCTTCAT
TCACAGGCGT CAATCGAGCA GTTGGCAGAG CGTGTGCAAG GTCAGTTCAA AATTGATGTG
CTGATTAATA ATGCCGGTGT GAGCGCCAAC GAACCCCTAG GTGAATGGAC GCAGACAGCC
TTTATGAATA ATTTTCTGGT TAACAGCGTG GCGCCCAGCT TAATGTGCCA AGCATTGCAC
GATACGTTAA CCTCACAAGC GCGCGTTATT CAGTTATCCT CAGGGGTTGC CTCTATCGCC
CAAAGTGACA AGTTTGCTCA AGCACCGTTA GACGCTTACG CCATGAGTAA GGCGGCGTTG
AATATGTTTA CGCGTCGTTT TGCAATCCAG CATCAGGCCA GCCAGCAAGT TATTTGCGCG
CTAAGCCCAG GTTGGGTTCA AACTGATATG GGTGGACAAG ATGCAACAAG TACAGTACAA
AATGCGTCGC GAAAAATAGT TACCTTAATT GAGCGGTTAA CCATAGCGGA TACTGGTCAT
TTTTTTGATG AAAATGGGGT GCAGCTCCCT TGGTGA
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| Protein sequence | MKTVLVTGAN RGLGLGLCQQ YFSQGDVVIG VCRASADQTD LLALKAQNED RMHIMHADLH
SQASIEQLAE RVQGQFKIDV LINNAGVSAN EPLGEWTQTA FMNNFLVNSV APSLMCQALH
DTLTSQARVI QLSSGVASIA QSDKFAQAPL DAYAMSKAAL NMFTRRFAIQ HQASQQVICA
LSPGWVQTDM GGQDATSTVQ NASRKIVTLI ERLTIADTGH FFDENGVQLP W
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