Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0161 |
Symbol | |
ID | 4172648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 192790 |
End bp | 193455 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638053160 |
Product | TetR family transcriptional regulator |
Protein accession | YP_659747 |
Protein GI | 109896492 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAAATA TTAGGAAGGG GACAGGGGAG TCTCGTCGCG GTAAAGAAAC TCTTTTACTG ATACTAAATT CCGCTAAAAC CATATTGATT GAGCAAGGCT ATAGTAAGTT GTCTATGCGT AAGGTTGCTG TGGGCGCGCA AATTAGCGTG GGAAATTTAC AATATTACTA TCCAAGCAAG AATGACTTGC TCAAAGATAT GCTCGATCAC AGCATTGATG AGTTTATGGA TGAATTTGAA CGATTAAGAT TGGGGACGAA TAACGATCCT GAGCTGCATC TCAAATCCAT TATCAATTTT ATCGTACTTG ATTTAGGCAA CCCCACAACG ACTACGTTTT ATCCTGAGTT ATGGGCCTTA GCAAATCACG ATGAATATGC TGACAAATTA ATGGATGAAA TATACGCTCG CGTGCGCGTA CCTCTTGAAG ATAGCATTAT GCGGCTAAAC CCAAGGCTTG ATTTTGAGCA GGTGCAGAAA GTGGCTTTGT TTATTTCTTC ATCCATGGAA GGCATGACCA TGTTCGTTGG CCACGGCAAA GTGTGGAACG ATTCTATTCA ACACATGGCG AACATAGCAA CAATGAGCTT TCTTCAGTTG GTCAAAAATA TTACGCCTGA AGATATTCAA GAGAATAGTT TTATACTTGC CGCTGACAAA GGGTAA
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Protein sequence | MRNIRKGTGE SRRGKETLLL ILNSAKTILI EQGYSKLSMR KVAVGAQISV GNLQYYYPSK NDLLKDMLDH SIDEFMDEFE RLRLGTNNDP ELHLKSIINF IVLDLGNPTT TTFYPELWAL ANHDEYADKL MDEIYARVRV PLEDSIMRLN PRLDFEQVQK VALFISSSME GMTMFVGHGK VWNDSIQHMA NIATMSFLQL VKNITPEDIQ ENSFILAADK G
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