| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0125 |
|---|
| Symbol | |
|---|
| ID | 4172152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 149032 |
|---|
| End bp | 150015 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638053124 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_659711 |
|---|
| Protein GI | 109896456 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1446] Asparaginase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCA CGCGCAGAAG GTTCTTAAAA TTATCATTAG TAAGCAGTAT CGCGAGTGCT
TTCGCCGCGA GCAGCAAAAC TGCTTTCGCT AGGGCAGAAA AAGCCAGTAA ACCTATAGTG
ATATCTACCT GGGAGCATGG TATCGCGGCA AATAAAGTGG CGTGGGACGT TCTCAACAAA
AATGGCCGCG CATTGGATGC TGTTGAGCAA GGCGTGCGTG TGCCAGAGGC TGACCCCTTG
GTTAGAACGG TTGGTTTGGG GGGATACCCT GACAGTGAAG GTAATGTGAC GCTTGACGCC
TGCATCATGG ATGAAAACAT GAATTGTGGC TCTGTGGCTT ACCTGCAAGA CATCCTGCAT
CCTATCTCGG TTGCGCGCAA AGTAATGGAA AATACGCCCC ACGTAATGTT AGTGGGAGCA
GGGGCTAAGA AATTCGCTGT AGAGCAAGGT TTTGCTGAGC AGAATTTACT TACCGAACAG
TCTAAACAAG ATTGGCTGGC GTGGCGTCAG TCGGGTCAGC AGAAAAAACA AATTAACATT
GAAAACCACG ACACCATCGG CATGTTAGCG CTGGATGCGT CGGGTAACTT AAGCGGCGCC
TGTACCACAA GTGGCGCAGC CTTCAAATTA CCAGGACGAG TGGGGGATTC ACCCATTATC
GGCGCCGGTT TATATGTGGA TAACGAAGTC GGTGCTGCCA CAGCCACGGG CATGGGTGAG
CTGATGATGA AAACCGTGGG CTGTCATCTA GTGGTTGAGC TGATGCGCCA AGGCGCTTCA
CCTCAAGAAG CCTGTCAAAA AGCAGTGGAG CGAATAGCCA CCCGTTTGGA CAACTTCGCC
GAATTTCAAG TGGGTTTTTT GGCCCTGAAC AAGGCTGGTG AGTACGGTGC TTATTGCATT
CAACCGGGTT TTAATTACGC GGTTAAAGAC GCCGGTGGTG AGCACCTTAT TGATGGCAAA
AACCTATTAG GGGAAGGCGC ATGA
|
|---|
| Protein sequence | MTATRRRFLK LSLVSSIASA FAASSKTAFA RAEKASKPIV ISTWEHGIAA NKVAWDVLNK
NGRALDAVEQ GVRVPEADPL VRTVGLGGYP DSEGNVTLDA CIMDENMNCG SVAYLQDILH
PISVARKVME NTPHVMLVGA GAKKFAVEQG FAEQNLLTEQ SKQDWLAWRQ SGQQKKQINI
ENHDTIGMLA LDASGNLSGA CTTSGAAFKL PGRVGDSPII GAGLYVDNEV GAATATGMGE
LMMKTVGCHL VVELMRQGAS PQEACQKAVE RIATRLDNFA EFQVGFLALN KAGEYGAYCI
QPGFNYAVKD AGGEHLIDGK NLLGEGA
|
|---|
| |