| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0104 |
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| Symbol | |
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| ID | 4172876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 117774 |
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| End bp | 118760 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638053103 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_659690 |
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| Protein GI | 109896435 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAGATG CGAAATGGCG GGTAGCCTTA CTGATTTTTA ACGGCGCTTG GGCGTCCACT
GTGTATGGCT CAATGGAGCT ATTTCACAGC GTTAATTTGC GCCGCCCCAA AGATCAGCAG
TTTCACTGCG ATTTGGTAAG TGCTGATAGC CAGCCAGTGC AACTGTATGG CGGGCAGTCA
ATTCAAGGTG ATGCCGTTAT TGGTGATGAG CCATATAACC TGATCATGCT GGCCCATTAC
TGGGGGGATT TTCAGCATCT TACCGAGCAA TACCCAAGCA TTCCCCCGTG GCTGGCTAAA
CAGCATGCAA AGGGAGCACG CATAGCAGGG GTTAACAGCG GTATTTTTTG GGCGGCAGAA
GCGGGGCTGT TAGATGGCGG ACGTGCCACT ACCTATTGGC GACATTTGCG CGAGTTCGAA
CTGCGATACC CAAAGGTGCA GTGGCAGGCT AACCAAGCCA GTGTTGAGCA TGCCAGAATT
TATAGCTCAA ACGGGCAGAA TGCGTCGATG GATTTAAGCT TACACTTGGT TGAGAAGTTT
TGCGGCGCAT CCATTGCTGC TGGCTTGGCC CGAGACATCA GCTTTGATAG TCGTCGTACT
TATGATTTAA ATTTGATCAA TATCGCGGGG TTTCGTCAGC ATCGAGACGT GGGTATTCAC
CGGGCACAAG ACTGGCTAGA CGAGCATTTT ACCCAAAGCG TTGAGCTACA AGCGTTGGCT
AATCAAATTG GCATGAGCAG ACGCACCTTT ATTCGCCGAT TTCAAAAAGC AACCGGTGAG
CTACCCTCTC GCTATTTACA ACGACTGCGA ATAGAAGCCG CTAAGCACCG CTTAGGCAAT
ACCCAAGACA GCATTAAAAC CATTGGAATG GGTGTGGGTT ATCGGGATAT CAGCTCATTT
TCGAAGGTGT TTAAGTCTTT GACAGATGTT ACCCCGAGGG AATATCGCCA GCGTTTGCGC
CCAACGGACA CTAAAACGCA GGCTTAG
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| Protein sequence | MADAKWRVAL LIFNGAWAST VYGSMELFHS VNLRRPKDQQ FHCDLVSADS QPVQLYGGQS
IQGDAVIGDE PYNLIMLAHY WGDFQHLTEQ YPSIPPWLAK QHAKGARIAG VNSGIFWAAE
AGLLDGGRAT TYWRHLREFE LRYPKVQWQA NQASVEHARI YSSNGQNASM DLSLHLVEKF
CGASIAAGLA RDISFDSRRT YDLNLINIAG FRQHRDVGIH RAQDWLDEHF TQSVELQALA
NQIGMSRRTF IRRFQKATGE LPSRYLQRLR IEAAKHRLGN TQDSIKTIGM GVGYRDISSF
SKVFKSLTDV TPREYRQRLR PTDTKTQA
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