Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pars_0239 |
Symbol | |
ID | 5054469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum arsenaticum DSM 13514 |
Kingdom | Archaea |
Replicon accession | NC_009376 |
Strand | + |
Start bp | 214061 |
End bp | 214816 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640467818 |
Product | rhomboid family protein |
Protein accession | YP_001152506 |
Protein GI | 145590504 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.270318 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGACG GAGAGGAGGA GAAGGGCAAG TGGACTCACA TTATTGAGGC CACGTGGAAG GAGCTACAAG ACACCTCGCC TCGGTACACC CCCTACGTGA CCTACGGCTT ATTGACGGCA AATATCTTGA TGTTCCTCGC CACGTTTGGC GCAATGTCAA ACGACCCGTG GAGCGTCGGC TTGACTGCGT CTGAGTTTAT TGAAAACCCC CTGGCGCCGA AGGTGTTGCT CTCAATGTTC GCCCACGCCG GCATTATCCA CCTACTGGGA AACATGGCCT ATTTGTACAA GCACGGCGAC AACGTAGAGG CAGCGATGGG GAGGCTGAGG TACCTCGTCT TCTACTTGAT CTGCGGCTAC GCCGCCGTCG CCTCACAAGT ACTCTACTCC TCGGCAGTGG GGACGCCTAG GGTGATGCTG GCGCCGATGG TGGGGGCGTC CGGGGCCATA AGCGGAGTCC TGGGGGCATA CCTCTACCTG TGGCCCGGGG CCTCCACCTA CCGTTGCTTC TGCTTTCGTT TTTCCTGCTA CTGCATGAGG CTCACCGCGC GCCGCGACAT AGCCATATGG CTTGGATTCC AGTTCGTGTT GCCAGTCTTG GAGCCTTCTG TGGCGGTCTT CGCCCATCTC GGCGGTCTTG TGGCGGGGAT AGCTCTAGCC CCCATCATCG CCAAGAGGGA AAACGTGGCG AGGTTAAGGC AGATGGTGAA GCAGGGGAGT ATAGAGGCCC CCCTCCAGAC GAGTACGAAG TGTTAG
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Protein sequence | MSDGEEEKGK WTHIIEATWK ELQDTSPRYT PYVTYGLLTA NILMFLATFG AMSNDPWSVG LTASEFIENP LAPKVLLSMF AHAGIIHLLG NMAYLYKHGD NVEAAMGRLR YLVFYLICGY AAVASQVLYS SAVGTPRVML APMVGASGAI SGVLGAYLYL WPGASTYRCF CFRFSCYCMR LTARRDIAIW LGFQFVLPVL EPSVAVFAHL GGLVAGIALA PIIAKRENVA RLRQMVKQGS IEAPLQTSTK C
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