| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_2343 |
|---|
| Symbol | |
|---|
| ID | 6459022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011061 |
|---|
| Strand | + |
|---|
| Start bp | 2450 |
|---|
| End bp | 4372 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642729074 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002019688 |
|---|
| Protein GI | 194335122 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.666079 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAACG AGGATGATGT ACAGTTCCGG CCCCGACTGA AGGGCAGGAA GCGCTCGGAA
AGAGTGCCCA GCATATCTTC TCTTTCCAGG CTTGTGCGCA AGGCTCGGGG CGGTCATGTA
CTGCGCGGCT ACCGCGCTCC GCATGTCCCA TCACCGAAGT CATACAGCAG GCGTGTGACC
GTCAAGATGC GGTTCGTGAA AATGAATGCA TACGGCCGTC ATGCCGCAAC GATGCATATC
GGTTACCTCG AACGGGACAA TGTGGAAAAA GACGGATCAA GGGGTCAGAT GTACGGCAGT
GACGGGGAGT TCAGGCGTGA TGATTTCATC CGTGTCATCG ATGGAGAACC CCATCAGTTC
AGGATCATCA TATCACCCGA AGACGCACAC GAACTTGACC TGACAACCTT CACTCGGGAT
CTCATGAAGC AGGTAGAGAA AGATCTCGGC AGGGAGCTTG AGTGGGGTGC GGTAAACCAC
TACAATACCG ACCATCCCCA CACCCATGCG GTCATCCGGG GCATTGACCG GCAGGGGAGG
GAAGTGATGA TCGACAGGGA GTATATCTCC AACGGCATCC GTCGACGGGC GCAGGAGCTG
GCGACCCGTG AACTTGGTGT AAAGTCGGAG ATCGAGTACC AGCAGGACAT GATCAGGCAG
ATATCTGCCC AGAAGGTGAC CAGTCTTGAC TGGCGCCTTG AACAGCTTGA GCAGGGAGGA
GTCATAACAT CGGAAGCCCT GCAGGGCAGG GCAGGAAGAC TTCATGTCGA CAAGATTCTT
TTCAGAAGGC TGCAGATGCT TGAGTCGCTG GGACTTGCGA CATCAGGCCA GTACGGAGTG
TGGTACATGC AGGAAGGGTG GAAGGAGCGT CTCAGGGAGC TGGGTATCCG TGAGGAACGG
TTCCGTACCA TGCACGATGC CATTGGTGGC GATCCTTCAC GGTACCGCAT CCTTGGCCTG
GAACATCGAG AGATTGAAGG CAGGCTCACC CGTATCGGCA TCGATGACGA ATACCGCGAC
CGGTACTACT ATATCATCGA GACAAGGGAC GGCAAGGCAT ATTATGCCGA TGCAGGCAGG
CACAGCAATG AAGCGGCATA CGCTGAACAC GATATCGTAA AGGCAGAGAT GACCGTCGAT
TCACGCGCAA AAAAAGCTGA CATTGCCATT AACAGCATAG CCACGAAAAA CGACGGAATT
TACAGCAAGG AGATGCATCT TGCTTCCATC AAGGATGATA TGATACGGCT GAGTAACCGC
AAGTTGGTTA CAAAAGAGGA GTTTGTCGAT GCGCATGTCA TGCGCATGCA CAAGCTTGTG
AGCATGGGGC TTGCCGAACC TGCTGAAAGG GATGGGGAGT GGGTTGTTGA TCCGGATATG
CAGCAGAAGA TACGGGAGCT TGACGCCAAG CAGCCGCTCT ACATGGTCAG GGTTCAGCGT
AAAGGCGGTT CTCTTGCACA TCAGGAAACA TACAGGGGAA GGACCTGGCT GGACATGTAT
ACAGATGATC CGGATGCGGC AGGAGCACAT TACGGGTTCG GGAAGGAGGT GCGTGAGGCC
GCGCGCAGAA GGGCAGTCTT CCTGCAGAAT GAGCTGCAGG TTGATCCAGC AGATCCGGCA
CGTGCGCGGC AGCTTGACCG TATCGAACGT CAGGGCCTGG CATCAGAGCA TTCACAGAAA
ACCGGATACC GCTACCGTCC TGCGGAGAAG CTGATGAAAC TTCAGGGGAC CGTCAGTGAT
ACAGGCTCTC TTGCAAGCGG CAGGCGTTAT GCAATGATTA CCAGCGAGCG TTCACGCGAG
TTTACCCTCG TGCCGTGGCG CAAGGAGTAT ACAGCATCAC TTGGAAAACA GGCAGAGGTG
TCACGCACGG TGTCTGGAGG CCGTTGGATG ATGCGCCAGA TCGGAAAAGA TCTCGGGAGG
TAG
|
|---|
| Protein sequence | MRNEDDVQFR PRLKGRKRSE RVPSISSLSR LVRKARGGHV LRGYRAPHVP SPKSYSRRVT
VKMRFVKMNA YGRHAATMHI GYLERDNVEK DGSRGQMYGS DGEFRRDDFI RVIDGEPHQF
RIIISPEDAH ELDLTTFTRD LMKQVEKDLG RELEWGAVNH YNTDHPHTHA VIRGIDRQGR
EVMIDREYIS NGIRRRAQEL ATRELGVKSE IEYQQDMIRQ ISAQKVTSLD WRLEQLEQGG
VITSEALQGR AGRLHVDKIL FRRLQMLESL GLATSGQYGV WYMQEGWKER LRELGIREER
FRTMHDAIGG DPSRYRILGL EHREIEGRLT RIGIDDEYRD RYYYIIETRD GKAYYADAGR
HSNEAAYAEH DIVKAEMTVD SRAKKADIAI NSIATKNDGI YSKEMHLASI KDDMIRLSNR
KLVTKEEFVD AHVMRMHKLV SMGLAEPAER DGEWVVDPDM QQKIRELDAK QPLYMVRVQR
KGGSLAHQET YRGRTWLDMY TDDPDAAGAH YGFGKEVREA ARRRAVFLQN ELQVDPADPA
RARQLDRIER QGLASEHSQK TGYRYRPAEK LMKLQGTVSD TGSLASGRRY AMITSERSRE
FTLVPWRKEY TASLGKQAEV SRTVSGGRWM MRQIGKDLGR
|
|---|
| |