| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_1158 |
|---|
| Symbol | |
|---|
| ID | 6460222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | - |
|---|
| Start bp | 1259543 |
|---|
| End bp | 1263223 |
|---|
| Gene Length | 3681 bp |
|---|
| Protein Length | 1226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642725149 |
|---|
| Product | SMC domain protein |
|---|
| Protein accession | YP_002015834 |
|---|
| Protein GI | 194333974 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.1908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.473044 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTT TGCAGTTATG TTTCAGAAAC CTGAATTCGC TTCAGGGAAC ATGGTCGATC
GACTTTACGG CACCGCCATA CGCTTCGGAC GGTATTTTTC TGATTACAGG TCCTACCGGA
GCAGGAAAAA GCACCATTCT TGATGCTGTC TGCATAGCGC TTTACGGCCA GACTCCACGC
CTGGGGCGTC TGACGAAAAG TTCCAACGAG ATCATGAGCC GTATGAGTGG CGACTGTTTT
GCCGAAGTGA CGTTTGAGAC GGATGCCGGA ATGTTCCGTT GCCATTGGAG TCAGCATCGC
TCACGCCGGC AGCCTGATGG TGAACTCCAG AACCCGCGAC ACGAAATTTC CGATGTGCAT
ACAGGCAAGG TCATCGAGTC GAAAATGCGG GATGTTCTGC TTGCCATCGA GGAACGCACC
GGGATGGATT TTGATCGTTT TACCCGCTCG ATGCTGCTGG CTCAGGGTTC ATTTGCGGTA
TTTCTGCAAT CCGACGCCGA TAAGCGTGCG CCGGTCCTCG AACAGATTAC CGGAACGGAG
ATTTATAGCG AGATTTCGCG TCGTGTTCAT GAGCGGAGCC GCGAAGAAAA GAATCATCTG
CAGCTGAAGA GGATCGAACT TGAGACCATC GACATGATGG GGGAGAGTGA ACGCTGTGCT
CTCGAAGAGC AGATCAATGA GGATCGTCGG AGTGAGAAAC AACTGCTTGA GCGCCTCAAG
AAAGAGCAGC AGGCTCTTCA ATGGCTGCAT CAGCTTCGCG ATCTTAATGA AGAACGGGTA
TCGATCGAAC GCGAAAGTCG TGAACTTGTT GTGCGTCGCG AACGTTTTGA ACCATCGCTT
CAGCGTTTGA ATCGTGCTGA GAAGGCGTCG CATATCGAGG GAATGTATCG CGAGCTTCTC
TCGTTGCGGG AGGAGCAGGA AGAGGCGCGT TCTGCACGCG ACGAAGCAGC CGCTCTTCTG
CCGCCTGCAG AAGAGCGGTG CGACGCATCG GCTAAGGCGG TCAATGATGC TGTACGACAA
CATGCTGAAC ATGAAAGGCT TCTTAAAGGG AGTCGGAAGC TGTTTTCGAC CGTGCGCCTT
CTGGACAGCA GGATAGCAGA TGCACATTCC TCTCTTGACA CCCTCAAGAC TCGCCATGCC
GGTCTCAGGG CCAAGGCAGA TGATTTTCTT GCTGCGATTG CTTCCGCCGA GCAGGAGCGT
CAGAGAGTGC AGGAGCATCT TACCGCTTCG GTAGCCTATC TGGAGGCTAA TGCCTGCGAC
AAGGCTCTGG TCAGTGAGTT GAGCACTCTT CTTGAACTGT TCGGGAGATG CAACGCGTTC
GTTTTTCAAT TGCGGGAAGC CGAAGAGGCT TCAGAGGCTG CTCGAAAACA CCAGCTCGAT
CTGCAGCAAG AGAAGGAAAC GATCGATGAG AAGGTCAGGA AAGCCTCGTC TGCTCTTGAG
GAGGCTTCCT GTCAGCAGCA GCAGCTCTAT AGCCAACTCG AGGCGACGCT TGACGGACGA
TCACTCCCCG AGTGGCGAAA TGAGGCGGCC CTCATTGCCC GTCATGAAGC TCTTTTCGAT
GCAGCCACCA TTGTGGCTGC ATCGCTGAAG GATCTCAGGC AGCAACATAC GATCTGTAAG
GAAAAAATCA TCAATGCCGG TGATCTTCTG TCAAAGACCG TTTCCGGGAT CGCGGAGTCG
GAAACTCTTC GAGAGCAGCT GCAGCAGGAG GTTCTGCATC TTGAAGAACG TGTTCGTCTT
GAAAGCCGCA TAAGGGATCT TGAAGATGAA AGAAGTCGCC TCGTCAAGGG CAGGCCCTGC
CCTTTATGCG GTTCTTTGCA TCATCCTCTC GTTCAGGCGA CGTTGCCGTT TCATGACGAT
ACGGCAACGT CGCTCGACTC GGCCCGTCGT GAACTCAAAA CGCTTGACGA CAAAATTGCT
GGGCAAAAGC TTCTACAGGC AGGCTATGAA AAAGATCGAA TCCAGGCCGA AGAACGTCTT
GGACAGATTG TCTCTGCAAT AGCATCGGAT CTGGAGCGTT TTGAGCAATA TCTGCCTCTT
CCCGGTTTTC CTGGAGATAA CGCTGAACCT TCAATTGACG CGATTTCTCT GGCGCGGGCC
GCGGTCGAAG AGCGGGCTGA GATGACGGCA AGGGTTCTCG GCAAAGCAGA GTCGATCGAG
GAACAGCTGA AGCGTGCCGG AGATCGGCAT GGCGTTCTTC GTGATTCACT TCTTGCTCTC
AAAAGCCAGG CCGAAAAAGC CGGCTACAGA AAAGAGCAGG CATTGGACGA GCTTGGCCGC
GCCGAAGAGC TTGTAGCAAA ATGTATAGAT GACAAGGCTG CGTGTGATGA GCGACTCATA
ACCTTGTTGA AACCCTACAG GGTGAAGGTC GAGACCGACG AAGAACTTTC AGCTGTTCCC
GATATCCTGA GATCGAAGCA TGCTGCCTGG GATGAGGAGA ACCGCCGGAA AGAACTTCAC
GAGCGACAGT TGCATGATAT TGATGCCTTC ATTCTTCAGC AGCATCTTCT TCTTGATGCT
CTGCAAACCG ACATCATAGA GCAGGATGAT GAGATAAGCC GTATGAAGAA GGATATCTGC
GAGCTTGAAG AAGGACGTCT TGAGCTCTTT GACCGGAAGG ATGTTGACAG GCAAGAGGCT
CTTCTTGATG AACGGCTCGC TGCAGCCGCT GAAGAAGTGG GCCGGCGACA GGATGAACAT
GCTGCTGTCA ACACATCCCT CCAGGAGATC CGTCACGAAT TGCAGACGCT TGACGTTTCA
ATGTTGAAAC GCCATCAGCG TCTTGCAGCT ATGAGCGAGC AGTTCCGTTC CAGTCTTCAC
CGGTCAGGTT TTCATGATGA AAACGATTTT TCCAATGCCC GCCTCACACA AGAGGATCGT
GAATCGCTCC TTCTGGAGGA GAAAAAATTG AACACAGACG CCTCGTTACT CGACCTTCGC
AGCGCAGCTT GCGTTAAGAA GCACGAAACG CTTGTGTCGA AAAATCTGAC TTCGTCCGGG
ATCGAAGAGG TTGAGCATTC CATGGCTGAC ATTGAAGAAG AGATTCGTGA GAGAGGGAAG
CGTCTTGGAG CGCTTGAGCA ACGACTGCAG GATGACGACA TGGCACGGAG CCGCCAGAAG
GAGAAAGCCG ACCAAATAGC ATCGCTCGTT GAGGGTTGCC GTCTTTGGGA GCAGATGTAT
GAGCTGATCG GATCGGCCGA TGGAAAAAAA TACAGAAATT TTGTTCAGTC GCTGACCTTT
GAGATGGTCA TCGTTCATGC CAACAGGCAG CTTATAAAAA TGACTGACAG GTACTTTCTG
GTTCCCGATC GCAAGAACCC CCTTGATTTG AATGTTGTTG ACAATTATCA GGGCGGTGAA
GTTCGATCAA CGCGCAATCT TTCCGGCGGC GAAAGCTTCA TCGTGAGTCT TGCTCTGGCT
TTGGGCCTCT CATCTATGTC AAGCCGCAAG GTCAGGGTTG ATTCGCTCTT TCTTGACGAA
GGGTTCGGTA CACTTGATGA AGACTCACTT GAAACCGCTC TTGAAGCGCT GTCCGGGCTG
CAGCAGACAG GAAAGCTGAT CGGTATCATA TCTCATGTAG CGGTACTTCG TGACCGGTTG
ACGACACAGG TTTTCGTCAG GCCGCTTTCT GGCGGTAAAA GTTCACTTGA CGGGCCCGGC
GTGACACCGA TATCACGGTA A
|
|---|
| Protein sequence | MKILQLCFRN LNSLQGTWSI DFTAPPYASD GIFLITGPTG AGKSTILDAV CIALYGQTPR
LGRLTKSSNE IMSRMSGDCF AEVTFETDAG MFRCHWSQHR SRRQPDGELQ NPRHEISDVH
TGKVIESKMR DVLLAIEERT GMDFDRFTRS MLLAQGSFAV FLQSDADKRA PVLEQITGTE
IYSEISRRVH ERSREEKNHL QLKRIELETI DMMGESERCA LEEQINEDRR SEKQLLERLK
KEQQALQWLH QLRDLNEERV SIERESRELV VRRERFEPSL QRLNRAEKAS HIEGMYRELL
SLREEQEEAR SARDEAAALL PPAEERCDAS AKAVNDAVRQ HAEHERLLKG SRKLFSTVRL
LDSRIADAHS SLDTLKTRHA GLRAKADDFL AAIASAEQER QRVQEHLTAS VAYLEANACD
KALVSELSTL LELFGRCNAF VFQLREAEEA SEAARKHQLD LQQEKETIDE KVRKASSALE
EASCQQQQLY SQLEATLDGR SLPEWRNEAA LIARHEALFD AATIVAASLK DLRQQHTICK
EKIINAGDLL SKTVSGIAES ETLREQLQQE VLHLEERVRL ESRIRDLEDE RSRLVKGRPC
PLCGSLHHPL VQATLPFHDD TATSLDSARR ELKTLDDKIA GQKLLQAGYE KDRIQAEERL
GQIVSAIASD LERFEQYLPL PGFPGDNAEP SIDAISLARA AVEERAEMTA RVLGKAESIE
EQLKRAGDRH GVLRDSLLAL KSQAEKAGYR KEQALDELGR AEELVAKCID DKAACDERLI
TLLKPYRVKV ETDEELSAVP DILRSKHAAW DEENRRKELH ERQLHDIDAF ILQQHLLLDA
LQTDIIEQDD EISRMKKDIC ELEEGRLELF DRKDVDRQEA LLDERLAAAA EEVGRRQDEH
AAVNTSLQEI RHELQTLDVS MLKRHQRLAA MSEQFRSSLH RSGFHDENDF SNARLTQEDR
ESLLLEEKKL NTDASLLDLR SAACVKKHET LVSKNLTSSG IEEVEHSMAD IEEEIRERGK
RLGALEQRLQ DDDMARSRQK EKADQIASLV EGCRLWEQMY ELIGSADGKK YRNFVQSLTF
EMVIVHANRQ LIKMTDRYFL VPDRKNPLDL NVVDNYQGGE VRSTRNLSGG ESFIVSLALA
LGLSSMSSRK VRVDSLFLDE GFGTLDEDSL ETALEALSGL QQTGKLIGII SHVAVLRDRL
TTQVFVRPLS GGKSSLDGPG VTPISR
|
|---|
| |