Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_06221 |
Symbol | |
ID | 6306321 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | - |
Start bp | 2880714 |
End bp | 2884751 |
Gene Length | 4038 bp |
Protein Length | 1345 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642640082 |
Product | RHS Repeat family |
Protein accession | YP_001913941 |
Protein GI | 188577012 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0388129 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCACCG GACAGACCAG CGTCAGCGGT CAGGTGCTGC TGGTGAATAG CCGACCGCTT GCCGGCGTCG AGGTCAGCGT CGGATCGCGC AAGACACGTA CCGATCCGAT AGGGCGGTTC GTGCTCACCG GTATCGCCCA AGGTCACCAG GAACTTTATG TCGATGGCAG CGCCGCAAAC ACTGCAGGGC GTGAGTATGG GCAATTCGTC GTTGGTATCG ATCTTCAGGC CGGTCAGCTC ACACGCTTGA CCTACACCAT GTACATGCCG CAAATCAGTG CGCGCGACAA GACGAGGATT GCTTCGCCGT TGAAGCAGGA TGTGGTGGTG ACCCATCCAG ACATCCCGGG ACTGCAGATT CATATTCCTG CCGGTACCGT GATCCGCGAT CGCAAGGGAA ACCTGGTGCA TGAGTTGGCC ATCGTGCCTA CGCCGGTCAA TCGCGCCCCA TTTCCATTGC CGGCGAACTA TCCAATGTAT TTCACGTTGG AGCCGGGTGG TGCATTGATC CAGGGCCTGA CCCCGCAAGC GGCACAAGGC GTCCAGGTGC TGTATCCCAA CTACGACAAA TTGGCGACCG GAACCCAGGC CAATTTCTGG ATATATCAAC CGTCCGAGGG CTGGCGGGTC TATGGCAAGG GACGGGTCAC GTCCGATGGC ACCCGCATCG CGCCGGAAGC CGGAGTGGGC CTATACCAGG CGATGGGAGC AAGTTACAGC GTCGACACCA ATTCGCCGCC GCCCGAACCC AACAAGCCGC CGGTCACGGA CGGATGCGGT TGCGATGGGG CGGGGGCAGG GGCCACAGCG GGCGATCCCA TCGACTTATA TACGGGAGAG TTTTCCTACG ATGAGACCGA CGCAGTCGTT CGCGGGCTGG TACCCATCTC GATATCCCGT TCCTATCGGC CAAACGACAC CATCAGTCGC GATTTCGGCA TCGGCACCGC CGCCAGCTTC CATTACACCA TGTATTCGGC GACGACCGAC TACAACCAAC TGCAACTGGT GCTTCCCAAC GGCGCAGCGA TCCCATTCGA TCGCCTTTCT GGAAGCGGGC TGGCTGGTCG CTGGGCACAG TCCGGTTCCA TTTCCGGCTA TGCCGGCGCC ACCATCGAGC AGGGCACGGC CTCAGGGCAC GGCTACTTGC TCACGCTACG CGACGGCAGC AAGATGTATT TCAACCAGTA CTCGCCAAAC CGCTTGGAAT GGACCACCGA TCGGTTTGGC AATCGGGTTG ACTATGTCTA CGACGCGGGA CTGGTGTCGC GCATCGTCTC TGCAAATGGA CGTTATCTGG ACATTGACTA CGACAGCGAC AATCGGATCA GCACGATCGC TGATCCATTG GGCAATACGT GGTCCTATGT CTACGACAGC TACGGCTATC TATCCAGCCT GACCCGCGCC GACGGCAGCA TGCGCAAGTT CACCTACAAA CGCCGCGCCG CCACGAATAC GCTACCGCTG CAGGTGCGGC TCGAGTCCAT CTACGATGGC AAAAACCAGC GTGTATTGCT GAATGGATTC GAGAGCGCCA ACGGTAGCTG GACTGGCCGG GTGGTCAAAC AGACCCAGGC CGACGGCGGC GTGCTGATGA TCGACTACGC GCACGTGGAC GGCAGCACGA CAGGTGTGCT TGTGACCAAG CCGGATGGCA GCGCGCGGCG GGTGGTGTTC GATCAGGTCA GCCATTACCC ACTGACCGAC ACCCAGGCGT ATGGCACGGC GTTGGCGCAG ACCACGACCT ATGAGCGCAG CGCGGGCGGG CAGATCACGG CCCGTATCGA CGCGCTGGGA CGACGCACCG AGTACCGTTA CGACAGTGCC GGACGTACGA CGCAGATCAA AGCAATGGCC GGTACGACAC AGGTACGTAC GACCACGTTG TCCTATACCG TCGAGGGCGA CCTCGCCACG ATCGTCGATC CGCTGAACCG CAAGACCAGC TTCGGCTACA CGCAGCGTTG CCTGACCTCG GTCACCAATC CGCTTGGCAA GGTGAGCAAG GCCACCTGTA ATGCCGCAGG CCAACGCCTG AGCATGGCAG ACCCGCTGGG CCACACTACC ACCTTGACGT GGACCGGCGA AGACCTCACC CAGGTCAGTG ACGCGTTGGG CCGGAACCTG AGGTTCCGCT ATGACGCACT GGGCCGGATG ATCGCCTCGG CAGACGCGCA GGGCAACCTC TCGCGACGCG AGTACGATCC GTTGAGCCGC GTGGTGAAAT CGATCGACCC ACTGGGCAAT GTAGTGGAGA CCGGCTTCGA TGCGAACGGC AATGTCACTG CAATCCTGCT GCCGCACGGC AACGGCGTGA CGTATACATA TGACACGCGC GACCGGCGCG TCTCGCGGAC CGACGCACTG GATCAGGTGG AGCGCTGGGT CTACGACACG ATGGACCGCG TGGTGCGCTA TACCGACCGG CGCACGCGCG TCACCACCTA TGCCTACGAC ACGCTGGGCC GGCTGACCAC GACCACGCTG CCGGGCATGG GCGGCACGTT GGCTGCCAGC TACGACAGCG GCAACCGGAT GGTGGCGCTG GCCGACAGTC TTTCCGGCAC ATTGAGCTGG ACTTACGATT CCTTCGACGA GCTCACCCAG GCCAACGGCC CGCAGGGCAT GGTCGGCTAC ACCTATGATG CGGTGGGTCG TCGCACCGGC ATGCAGGCCG ACACGCAGGC GCAGGTGCTT TACAGCTACG ACGTAGGCGA CCGCCTGACC GGCATCAGCC AGGGCAGCGA GTCGGTCAGC TTCGCCTACG ACAACGCCAA TCGACTCACT AGCCAGACGC TGCCCAATCA GGTACAGACC GTCTACACCT ACAACAACGC CAACCAGATG ACCGGCCTTG CGTGGGGCAA GGCGGGGCAG ACGGCGTTGG GCAGCCTGGG CTATGGCTAC GACAGCATCG GCCAGTTGGT GGCGCAGACC GGTACGCATG CGCCGCAAGC CTTGCCGCCC TCCAGCAGTG GCAATGTCTT CGACGACAAT AATCGGCAGA CGCAGGCGAG CACTGTCGCG CTGAGCTACG ATGCCAACGG CAACCTGCTC AGTGATGGCA GCCGCACCTA TGTCTGGGAC GACCGCGACC GACTGAGCCA GATCCAGCAG GGCGGCACCA CGATTGCCAG TTTCAGTTAC GACGCGCTGG GCCGTCGCAT CTCAAGGAGC GAGGCCGGCA CGACCACCAA TTATTTGTAC GACGGACAGA ATGTGGTGCA GGAAACGCAG GGCAGCACGG TCAATCCGAT CCTGACCGGC CTGGGCATCG ATCAACGTTA CGCCCGCAAC GACACCGGCG GGCGGACGTA CTTCCTGACC GATATGCTGG GCAGCACGCG GTTGCTGACG GATGCGGGCG GTAGCGCTGT GCAGCGGTAT GAGTATGATC CGTATGGGGC AACCAGTCAG AGCAGCACGG CGTATACGAA TCCGTACCAG TACACGGGGC GGGAGAAGGA TATAAACGGC TTGTACTACT ACCGTGCGAG ATACTATCGG CCGGATTTGG GTGGTTTTAT AAGCGAGGAC CCGATCCAAT TGGCTGGAGG AGTCAATAGC TATATGTACG CTGATGACAA TCCTGCCATT GAAAATGACC CGTTGGGATT AACATCATGG AGTGGATATG CACATGGCGG CGGAATTAGC GGTATCTTGG GATACCAGAA AGTGAATTAT CATTTGGTGT CAGACTGTGC ACTGGGTGAA ATTGTAACAG TCGATATAGA TGTAAGTTAT TTAACGGGTG GTGTTGGGTC TCCAATTTCT TATACCATAT CAAATGTGCA ATTTAATGAT CCATATGCAG GGGCTTATCC AGAATCACTA ACAGGGACTG CGTCGTATAT GTCAGCTGGA TTTGCTGCAG GTGGTGGAGC GAGTTATGGG ACAACTACCA TAGGTGATGC CTTCTCGAAT GTCAGCCTTG GGGGGCAAGG TGGTTGGGAT GCAAGTATAA CTGCAGCTAT TGGCAAAGCT TCGATTGACG GCAAGCCTAT TCGTAGAAAA TGTGGGTGTG GTAAATGA
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Protein sequence | MATGQTSVSG QVLLVNSRPL AGVEVSVGSR KTRTDPIGRF VLTGIAQGHQ ELYVDGSAAN TAGREYGQFV VGIDLQAGQL TRLTYTMYMP QISARDKTRI ASPLKQDVVV THPDIPGLQI HIPAGTVIRD RKGNLVHELA IVPTPVNRAP FPLPANYPMY FTLEPGGALI QGLTPQAAQG VQVLYPNYDK LATGTQANFW IYQPSEGWRV YGKGRVTSDG TRIAPEAGVG LYQAMGASYS VDTNSPPPEP NKPPVTDGCG CDGAGAGATA GDPIDLYTGE FSYDETDAVV RGLVPISISR SYRPNDTISR DFGIGTAASF HYTMYSATTD YNQLQLVLPN GAAIPFDRLS GSGLAGRWAQ SGSISGYAGA TIEQGTASGH GYLLTLRDGS KMYFNQYSPN RLEWTTDRFG NRVDYVYDAG LVSRIVSANG RYLDIDYDSD NRISTIADPL GNTWSYVYDS YGYLSSLTRA DGSMRKFTYK RRAATNTLPL QVRLESIYDG KNQRVLLNGF ESANGSWTGR VVKQTQADGG VLMIDYAHVD GSTTGVLVTK PDGSARRVVF DQVSHYPLTD TQAYGTALAQ TTTYERSAGG QITARIDALG RRTEYRYDSA GRTTQIKAMA GTTQVRTTTL SYTVEGDLAT IVDPLNRKTS FGYTQRCLTS VTNPLGKVSK ATCNAAGQRL SMADPLGHTT TLTWTGEDLT QVSDALGRNL RFRYDALGRM IASADAQGNL SRREYDPLSR VVKSIDPLGN VVETGFDANG NVTAILLPHG NGVTYTYDTR DRRVSRTDAL DQVERWVYDT MDRVVRYTDR RTRVTTYAYD TLGRLTTTTL PGMGGTLAAS YDSGNRMVAL ADSLSGTLSW TYDSFDELTQ ANGPQGMVGY TYDAVGRRTG MQADTQAQVL YSYDVGDRLT GISQGSESVS FAYDNANRLT SQTLPNQVQT VYTYNNANQM TGLAWGKAGQ TALGSLGYGY DSIGQLVAQT GTHAPQALPP SSSGNVFDDN NRQTQASTVA LSYDANGNLL SDGSRTYVWD DRDRLSQIQQ GGTTIASFSY DALGRRISRS EAGTTTNYLY DGQNVVQETQ GSTVNPILTG LGIDQRYARN DTGGRTYFLT DMLGSTRLLT DAGGSAVQRY EYDPYGATSQ SSTAYTNPYQ YTGREKDING LYYYRARYYR PDLGGFISED PIQLAGGVNS YMYADDNPAI ENDPLGLTSW SGYAHGGGIS GILGYQKVNY HLVSDCALGE IVTVDIDVSY LTGGVGSPIS YTISNVQFND PYAGAYPESL TGTASYMSAG FAAGGGASYG TTTIGDAFSN VSLGGQGGWD ASITAAIGKA SIDGKPIRRK CGCGK
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