| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04177 |
|---|
| Symbol | |
|---|
| ID | 6304342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 831541 |
|---|
| End bp | 833313 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642638120 |
|---|
| Product | cellulase |
|---|
| Protein accession | YP_001912002 |
|---|
| Protein GI | 188575073 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4305] Endoglucanase C-terminal domain/subunit and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTCAC ACATCCATTT CTTGATCGCG CTTGCAACGC TCGTCCCGGT CACCGCGCCG
GCGATGCAGG TCAGTACGCA AGCGCCCCTT GTCGATGCAA CAGGTCAGAC GCTGCACATT
CGCGGGGTCA CCTGGCCCGG CTTCGATCGC GCCGGGCTGG CGGCCGTCGG CATGCGCAAC
AACACACTGG CGCAACTGCT GGATCGGATG GAGGCGTCAG ACATTAATGC CGTGCGTGTG
CCGGTCTGCG CCGCTGTTCT GCAACGCGCC CCTGTGGCAG CTGCAGAAGT TGCCGGCGAT
TCGACGCTGC GCGGATTAGA TTCCTTGCAA CTGCTCGACG CAGTGGTGCA TGCCGCAACC
CAGCGTGGGA TGCAGGTGAT GTTCGCGTTT GCAGATGGAG GCTGCGATGA CCGCGCACCG
GTCCTGGGCG CACAGCAGCA AGCATGGACG CGCGGCCTGG TCACGCTGGC ACGCCGCTAT
GGCGGCAACG CCAATGTCCT GGGTATCGAC CTTGGCAGCA GCGGCTATCG CAATGCCAGC
TGGGCAGGAA ACGCGGCGGA TCAGAATTGG AACCGGGTAG CGTCGCGCGC AGCTGCAATG
GTGCTGGCGC AGGCACCGCG CTGGGTCGTC GGTGTGGAAG GTGTGGGCAG CAATGCGGTG
TGCAGTGACC CAGGGCGCAA AGCGCTTGGC AGCAATCTTC AGCCGTTCGC GTGCGTGCCG
CTGGACATCG CTCCCAGACA CTTGGTGTTG ATGCCGAAGT TGGCAGGCCC GGATCGCGAT
ACGACCGATG CCTTCGCCGC ACCCGGATTT GCGCAGGCAC TGCCCGCCAT GTGGCAACGC
GACTTCGGCC AATTCGCAAT CGACCATACA GTGGTACCCG TCAGCCTCGG CGGTGGACTG
GGCGATGGCG ACCCGCGCGA CCCGGCATGG CAAACCGCAT TGAGCGGTTA TCTGGCAAAC
GCAGGAATGC GCAGCGCATT TCTCGGCAGT TGGGAAACGA GCAATGCCAA CAACGGGGGC
CTGTTGGCGC CGGATGGCAG CCCCCGCGCA GACAAACTGC TGATCTTGCG TCATGCTTGG
GGCATGTTGC CCGTGATGCC CGCCATTGCG ACAGCAACTG GCGACAGCAC GAAGAATGCG
AGCGGGACGA AGGGGTGGAA TAGTACTTTC ACCGGCACTG CCACCTCGAC CGGCTCCGGC
TACTCTGGCG GCGCGGTCCT GCTGGACCCC ATTCCAAGTG ATGCCTTCAT CACCGCGCTC
AACTCCACGC AGATGAACTT CGGCGGGATC AAGGCCGCGC TGGCTGGTGC CTATCTGGAA
GTGACCGGCC CCAAGGGAAA GACCACCGTC TATGTCACCG ACCTGTATCC GGACGGCGCC
TCCGGCGGCC TGGATCTGTC GTACAACGCC TTCGCGGCGA TCGGCAACCT GGCAGACGGG
CACATTCCGA TCAGCTGGAA GGTCGTCCGC GCGCCGATTA CCGGCAACGT GCAGTACCGC
ATCAAAGAAG GCAGTTCACG CTATTGGGCC GCGATCCAGG TGCGACACCA CATCTATCCG
GTGGTCAAGC TCGAAGTCAA ACAAGGCAGC ACCTGGACCA GTCTGCCGAA GACCCCCTAC
AACCATTTCG TAGGCACAAA CCTCGGCAAC AAGCCGCTGT CCATCCGCAT CACCGATATC
CGCGGGAAGG TCATCACGGA CAAGATTCCC GCGCTGCCGG AATACGGTGG CTCCGCGGCG
TATTTCGAGC CCGGCCACGT ACAGTTTCCC TGA
|
|---|
| Protein sequence | MLSHIHFLIA LATLVPVTAP AMQVSTQAPL VDATGQTLHI RGVTWPGFDR AGLAAVGMRN
NTLAQLLDRM EASDINAVRV PVCAAVLQRA PVAAAEVAGD STLRGLDSLQ LLDAVVHAAT
QRGMQVMFAF ADGGCDDRAP VLGAQQQAWT RGLVTLARRY GGNANVLGID LGSSGYRNAS
WAGNAADQNW NRVASRAAAM VLAQAPRWVV GVEGVGSNAV CSDPGRKALG SNLQPFACVP
LDIAPRHLVL MPKLAGPDRD TTDAFAAPGF AQALPAMWQR DFGQFAIDHT VVPVSLGGGL
GDGDPRDPAW QTALSGYLAN AGMRSAFLGS WETSNANNGG LLAPDGSPRA DKLLILRHAW
GMLPVMPAIA TATGDSTKNA SGTKGWNSTF TGTATSTGSG YSGGAVLLDP IPSDAFITAL
NSTQMNFGGI KAALAGAYLE VTGPKGKTTV YVTDLYPDGA SGGLDLSYNA FAAIGNLADG
HIPISWKVVR APITGNVQYR IKEGSSRYWA AIQVRHHIYP VVKLEVKQGS TWTSLPKTPY
NHFVGTNLGN KPLSIRITDI RGKVITDKIP ALPEYGGSAA YFEPGHVQFP
|
|---|
| |