Gene PXO_03880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPXO_03880 
SymboltetR 
ID6303854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthomonas oryzae pv. oryzae PXO99A 
KingdomBacteria 
Replicon accessionNC_010717 
Strand- 
Start bp352452 
End bp353132 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content66% 
IMG OID642637643 
Producttranscriptional regulator TetR family 
Protein accessionYP_001911528 
Protein GI188574599 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.568548 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTCCA TCGCCCTGCC TTCCCACGAC GCGCCGCCGT CCCGCAAGCC GGCGATTTCA 
CGGGAGGATC TCATTGCTGC AGCGTTGTCG TTGATCGGCC CGCACCGCAG CCTGTCCACG 
CTGAGCCTGC GCGAAGTGGC ACGCGAGGCC GGCATCGCTC CGAACAGCTT TTACCGCCAG 
TTCCGCGACA TGGACGAGCT CGCCGTGGCC TTGATCGACC TGGCCGGGCG TTCGCTGCGC 
ACCATCATCG GCCAGGCGCG CCAGCGCGCG ACCTCCACCG ACCGCAGCGT CATCCGCGTC 
TCGGTCGAAG CCTTCATGGA ACAGCTCCGC GCCGACGACA AGCTATTGCA CGTGCTGCTG 
CGCGAAGGCG CGGTGGGCTC GGACGCCTTC AAGCTGGCGG TGGAACGCGA ACTCAGCTAT 
TTCGAAGACG AGCTGCGTGT GGACCTGATC CGCCTGGCCG CCGCCGACAA CGCCAAGCTC 
CACGCGCCCG CCCTGGTGTC CAAGGCCATC ACCCGGCTGG TGTTTGCGAT GGGCGCGGTC 
GCAATGGATT CGCCGCCGGA AAAAGACCCA GAGCTGATCG AGCAGATCTC GCAGATGCTG 
CGCATGATTC TGACCGGCGC CCGCACCCTG GGCACACACG GCGGCGGCTT CAACTCTGGA 
TCGCAACACC AACGGTTGTG A
 
Protein sequence
MTSIALPSHD APPSRKPAIS REDLIAAALS LIGPHRSLST LSLREVAREA GIAPNSFYRQ 
FRDMDELAVA LIDLAGRSLR TIIGQARQRA TSTDRSVIRV SVEAFMEQLR ADDKLLHVLL 
REGAVGSDAF KLAVERELSY FEDELRVDLI RLAAADNAKL HAPALVSKAI TRLVFAMGAV 
AMDSPPEKDP ELIEQISQML RMILTGARTL GTHGGGFNSG SQHQRL