| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00475 |
|---|
| Symbol | |
|---|
| ID | 6305376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 1911154 |
|---|
| End bp | 1915248 |
|---|
| Gene Length | 4095 bp |
|---|
| Protein Length | 1364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642639145 |
|---|
| Product | two-component system sensor histidine kinase-response regulator hybridprotein |
|---|
| Protein accession | YP_001913018 |
|---|
| Protein GI | 188576089 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.679058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAGA GCCGCTGGGA TTTGCGCATG ATCTATGGGC GTCGCGCATT CTTTGGTGCA
TTGCTGATCC TGAGCGCCGG CCTGATCGCC GCCATCGTCA CCGGCGTGTG GCTGCAACAG
CATAACGAGC GCGAGCGCGA GCAGCGGTTC CAGTATGTGG TGCGCACGCT GACACGCAAC
ATCAGCGAAC GCATGTCCAC CTTAGAGCAT GGCTTGCGTG GCGCACGCGG TGCGGTGATC
GGCGCAGGCA GTGACATCAT CAGTCGAGAA CGCTTCACCT CGTACAGCCG TTCGCGGGAT
TATCCGCGCG AGTTTCCTGG CGTGCTGGGC TATGGCTATA TCCATCGCGT CGCCCCGGCC
GACGAAGACG CGTTTTTGCA GAATGCGCGT GCCGACGGTG CGCCGGACAT CCAGCGCCGG
CCATTGGCGC CATGGGATGG CGAGCGCTAC ATAGTGTTGT ATTTCGAGCC GGAATCCTCG
GGCAATCACC CGCTGGGCAT CGATATCGCC TCCGATCCGC ACAGGCGTGC CGCCGCTTTG
CAGGCCGCGC GCAGCGGCGA GCCCATCATG ACCTCGCCGA TCTCGCTGTT CGGTTACCGT
GTTCCCAGAG AAAGCGGCTT TTGGTTGCTG TTGGCGATCT ATCGCGAAGG CATGCCGTTG
CAGACGCCGC AACAGCGCAT GGTCGCCACC AGCGGCTGGG TGTATGCGCC TTTCAGCCTC
GCGCAGATTG TGCAAAGCGC ACTGGGCGAA CGCGACGACA TCGCGCTGGA TATGTCCGAC
CGCAACGAGC CAACCCACAA TTTATATCGC AGCGGCACGC CGGCCATCGA CAGTGCGCTG
GGTCCGCCGG TGGTGACGTT GTTGCCGATG TATGGCCGCA CCTGGGTCAT CACCGCCCAC
CCCACCGCCA GCTTCATCGC CTCGCTCAAC CAGAATTCGC CCTGGTTGAT CGGCGGACTG
GTAATGGCCG GTTCGGTGCT GTTTGCCGCC CTGCTGGTGC TGTATTTCAG CAATGGACTA
CGCCGCGAAG AAGTCCTGCG CAAGCAGATG GAGCTGGCCG CACTGGTCAG CCATTCCAGC
GAAGCCATCG TTGCCGAAAC CCCTGATGGG CGCATCACGC TTTGGAATCC CGCCGCCGAG
GCGATGTTCG GCTACACCGC CGAAGAGGCG ATCGATCAAG ACCTGACCAT GCTGCTGGCG
CCGCAGCCCT ATGCGATGCC TGAGATCGAC CATGCCGACG CTGCGCTGGC GGCCAACGCA
TCGGCGGCGC AGACCATGCA CCATCGCGAC GGGCATCAAG TGCATGTACT GGCCAGCAAA
TCGCCCATTA TCGAAAGCGA AGGCACACTC AGCGGGCATT CGCATTTTTT CCGCGACATC
TCCGACCGCG TGCGCTCGCA TCAACGCAGC ATCGATCTCA ACGCCTCGCT CGAACATCAG
GTGGCCGAAC GCACCGGCGA GCTGGTGAAG TTCTCGGTAC TGCAACGCGC GATCCTGGCC
CACGCCGGCT ACGCCATCAT CGCCACCGAT TCCAGCGGCT TCGTCACGTT GTTTAATCCG
GCTGCGGAAA AAATGCTGGG TTACAACGCT GCAGAAGTGA TCGGTCGGCG CAAGGCCAGC
CAGTTCATCG AACAGGACGA ACTGCAAGAG CGCGCGCGCA TGCTCGCCGA CCAGACCGGT
ACGCCGGTGG CGCATACGCT GGAAGCGATC GCCGCACTCA CCAGCCTGGG TCGCAGCGAC
ACCAGCGAGT GGACCTACGT CAGCCATGAC GGACGTCGCC TGCCGGTGCT GCTGACCTTG
AGCACCCTGC GCGACGACCA CGACCAGGTG ATCGGCTATC TGGGCGTGGC GGTGGACCTC
ATCGAGCAGA AGCTGCAGGA AAAACAGCTG CGTCTGGCGA TGGACGCGGC CAAGAGCGCC
AATCAGTCCA AGTCCGATTT CCTGGCCAAC ATGAGCCACG AAATCCGCAC GCCCATGAAC
GCCATTCTGG GCATGCTCTA CCTGCTTCAG CGCAGCGAGC TGCCCGGCGC CGCGCAGGAC
ATGGTCGCCA AGATCGACCG CTCCGCACGC ACGCTGCTGG AAATCATCAA CGACATCCTG
GACTTCTCCA AGATCGAGGC CGGGCGTATC GATCTGGAAT GCGCGCCGTT CGATCTCAAC
CAGCTGTTCG ACAACATCGC CGAACTGATG CGCTCCTCGC TCAGCGCCAA GCCAGTGGAG
ATGATCGTCG AACCCTTGCC GCGCGACAGT CGTTGGCTGC TGGGCGATGC GCTGCGCATC
AATCAGGTGC TGGTCAACCT GGTCGGCAAT GCGATCAAGT TCACCGAACA GGGCGAAGTG
GTGCTGTCGG TGCGGCGCTT CCCCAGCGGC GACCCCAACA AATTCAAATT GCTGTTTTCG
GTACGCGATA CGGGCATCGG CATCTCCAAG GAAAAGCAGA GCCTGATCTT CTCGCCATTC
CTGCAGGCCG ACACCTCCAC CAGCCGGCGT TACGGCGGCA GCGGTCTGGG TCTGACCATC
AGCCGGCGCT TGATCGAATT GATGGGCGGC GAACTGGAAG TGGAAAGCGT ACCCGGCCGC
GGTAGCGAAT TCTATTTCGT GATCACGCTG GAGAAATCTG CACCACCCCA AGAACAGCGC
GACCTGCCCA GCTTGCCGCC GGAAGCGATG CCGCGCGTGC TGATCGCCGA CGACCACGAT
GCCGCGCTCA ACAACCTGGT GCGCATCGCC ACCGAGCTGG GCTGGCGCGT GGATGCGGTG
GCCAGCGGCC AGGCCGCGCT GCAAGCCATC GAACACGCTG CAGAGCCATA CGATATTTTT
CTGCTCGACT GGCGCATGCC CGACATCGAC GGGGTCGCCA TTGCACGCGA GATCCGTGCG
CGCGCCACGC CCGGCCCACA TCCGGTGATC GTCATGGTGA CCGCCTACGA GCGTCGTCTG
CTGGAACAGC ACCCGGAACA ACAGGATCTG GATGCGGTGA TGACCAAACC GGTGACCGGC
GCGGCCCTGC ATCGGCTGTT CGAACAACTG ATGGACCAAC GCCCAGGCAC CCGTGCGGCC
ACCCCCACGT TCGTTGCGCG GCGTCTGGAA GGCGTGCACC TGCTGCTGGT CGACGACAGC
GAAATCAATT GCGAAGTGGC GCAGCGCATT CTTGAAGGCG AAGGCGCCAT GGTCACCGTC
GCCCACGATG GCGAACAGGC CGTCAGCACG CTCAAGCGCA CGCCCAACCT GTTTCATCTG
GTGCTGATGG ATGTACAGAT GCCGGTGGTG GACGGCTACG AGGCCACCCG CCGGCTGCGC
CAGATTCCCG CACTGGCCAG CTTGCCGGTG ATTGCGCTGA CCGCCGGCGC GTTCCGCCCG
CAGCAGGAAA AAGCCCTGGC AGCCGGCATG AATGGTTTTA TCGCCAAACC GTTCAATGTC
GAAGAATTGG TCACTGCCAT TCGGCATTTT CTGCAGCCGG GCACGCGGCG CATTCCGTCG
CTTCCGCATG AGACCGAGGT GTATGCCGGT CCCGAGTGGG AGCATAGCGA ACCTGAATTG
CTGGACGCCA CGCGCGCACG CAGCCTGTGG CGCGAACGCG AGCCGTATGC GCGCTATCTG
ACCAAGCTGC TGCGCGACAA CCCGGACCCG GCGGAAGTGG CCGCCGAGCA TCTGCGCCGC
AATGAATTGC CGGCCATCGG TGCGATGGCC CACAAGTTGC GCGGCGCGGC CGGATCGCTG
GCATTGCCTG CGCTGGCTGA TGCAGCTGGC GACCTTGAAA CCAGTATCGA CGAAGGGCAC
GACATCACCG CCTCGCTGAT CGCGTTGAAG GACGTCATGC AGCGCACCGC TGAGGCCATC
CAGGCATTTT TGCAACACGG CGACACCGAC ATTGCCGCCG ACGAGGATGG CGTTGCATTG
GATGCAGACA GCGTGCAGAT CCTGACATCG GCCTTCGCCA GCGACAATGC CGACCAGATC
GACCACGCGC TGATGATCTG CGCGCCACGT TTACCGCGCA CGCTGCAGGA AGCATTGCAG
CGCGCGGTCG AAGATTTCGA CTTCCGTCGC GCCGAAACCA CGTTGCGCGA GTGGCAGACG
ACCCACCTGC ACTGA
|
|---|
| Protein sequence | MPKSRWDLRM IYGRRAFFGA LLILSAGLIA AIVTGVWLQQ HNEREREQRF QYVVRTLTRN
ISERMSTLEH GLRGARGAVI GAGSDIISRE RFTSYSRSRD YPREFPGVLG YGYIHRVAPA
DEDAFLQNAR ADGAPDIQRR PLAPWDGERY IVLYFEPESS GNHPLGIDIA SDPHRRAAAL
QAARSGEPIM TSPISLFGYR VPRESGFWLL LAIYREGMPL QTPQQRMVAT SGWVYAPFSL
AQIVQSALGE RDDIALDMSD RNEPTHNLYR SGTPAIDSAL GPPVVTLLPM YGRTWVITAH
PTASFIASLN QNSPWLIGGL VMAGSVLFAA LLVLYFSNGL RREEVLRKQM ELAALVSHSS
EAIVAETPDG RITLWNPAAE AMFGYTAEEA IDQDLTMLLA PQPYAMPEID HADAALAANA
SAAQTMHHRD GHQVHVLASK SPIIESEGTL SGHSHFFRDI SDRVRSHQRS IDLNASLEHQ
VAERTGELVK FSVLQRAILA HAGYAIIATD SSGFVTLFNP AAEKMLGYNA AEVIGRRKAS
QFIEQDELQE RARMLADQTG TPVAHTLEAI AALTSLGRSD TSEWTYVSHD GRRLPVLLTL
STLRDDHDQV IGYLGVAVDL IEQKLQEKQL RLAMDAAKSA NQSKSDFLAN MSHEIRTPMN
AILGMLYLLQ RSELPGAAQD MVAKIDRSAR TLLEIINDIL DFSKIEAGRI DLECAPFDLN
QLFDNIAELM RSSLSAKPVE MIVEPLPRDS RWLLGDALRI NQVLVNLVGN AIKFTEQGEV
VLSVRRFPSG DPNKFKLLFS VRDTGIGISK EKQSLIFSPF LQADTSTSRR YGGSGLGLTI
SRRLIELMGG ELEVESVPGR GSEFYFVITL EKSAPPQEQR DLPSLPPEAM PRVLIADDHD
AALNNLVRIA TELGWRVDAV ASGQAALQAI EHAAEPYDIF LLDWRMPDID GVAIAREIRA
RATPGPHPVI VMVTAYERRL LEQHPEQQDL DAVMTKPVTG AALHRLFEQL MDQRPGTRAA
TPTFVARRLE GVHLLLVDDS EINCEVAQRI LEGEGAMVTV AHDGEQAVST LKRTPNLFHL
VLMDVQMPVV DGYEATRRLR QIPALASLPV IALTAGAFRP QQEKALAAGM NGFIAKPFNV
EELVTAIRHF LQPGTRRIPS LPHETEVYAG PEWEHSEPEL LDATRARSLW REREPYARYL
TKLLRDNPDP AEVAAEHLRR NELPAIGAMA HKLRGAAGSL ALPALADAAG DLETSIDEGH
DITASLIALK DVMQRTAEAI QAFLQHGDTD IAADEDGVAL DADSVQILTS AFASDNADQI
DHALMICAPR LPRTLQEALQ RAVEDFDFRR AETTLREWQT THLH
|
|---|
| |