| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00283 |
|---|
| Symbol | rhsD |
|---|
| ID | 6305073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 1569989 |
|---|
| End bp | 1571830 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642638845 |
|---|
| Product | RhsD protein |
|---|
| Protein accession | YP_001912721 |
|---|
| Protein GI | 188575792 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.333499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCTATC GCTACGTGGA AGGCGACCTG GTGGCAGCCG AGGACGCGCT CGGCGCACCG
CGCAGGTTCG TCTACCGCCA GCACCGCCTG CTGCAGCACA CCGACCGGGT GGGCCTGTCG
TTCTATTACG ACTACGACCG GCAGTGGCGC GTGGTGCATA GCTGGGGCGA CGGCGGCTTG
TACGACTACC GCTTCGCCTA TGACGACCTG CTGCGCGAGA CCGCAGTGAC CGATTCGCTG
GGACATGTCT CGTTGGTGAA GTTCGACGAG AACCGCCTGC CGTTGTGCGA GATTGACCCG
ATGGACGGCG TCACCGTGTT CGCGTACGAC GCGGTTGGCC GCACCGTGGC GGTCACCGAT
CCGGAAGGGC TGTGCACACG CTTCGACTAT GACGAGCGCG GCAATCTGCG CACGCTCACG
CGGCCGGATG GCAGCACGCT GCGCCAGACC TTCGATGACG ACGACCGCCT GATCGCCGTC
GCCGATCCGG ATGACCATGC CTGGCAGCAA CGTCACGACG CGCGTGGCTT GCTGGTGGAG
CAGACCGATC CACTGGGAGC AACGGCGCAG TATGTCTACG ACGATCATGG CCAGCTGCGC
GCGCACACCA ATGCCCGCGG CGCGACCACG CGACTGGAGT ACGACCGCTA CGGCCTGCTG
GCCGCGTTGA TCGATGCGCT GGGGCAGCGC AGCCACTTCG CGCACGATGC ACTGGGCCGG
CTGCGCAGCC AGTACGATCC GCTCGGCCAT GCCAGCACGT ACGAGTACGA CGCCAAGGGA
AGGCTGGTGC GGCTGCGCTC GCCCGGCGGC GGCGAGGTGC AGTGCGAGTA CGACGCCGAA
GACCAGCTTG TCCGTTATGT GGACGAAGCG GGCGCGCAGA CCCGGCTGCA GTACGTCGGC
ATCGGCCAGA TCGGCAAGCG TCTGCAGGCC GACGGGCACA CGGTGGAGTA TCGCTACGAC
AGCGAGGAAC AGCTGGTCGC GGTGATCAAC CAGCGTGGCG AACGCTATGA GCTCAAGCGC
GATGCGCTGG GCCGCATCGT CGAGGAAGTG GATTACTGGG GCCAAGCCCG CCGCTACGAC
TACGACGCCT GCGGCCGTCT GACCGCGACC CACGATCCGC TCGGTCAGCG CATCGCCTAT
GCCACCGACA AGCTGGGCCG GATCGTGCGC AAGACGCTGG CCGACGTGCG CCAGCCGGGC
CAGCAGCTGC AGGAGCATTT CGTCTACGAC CGGCGCGGGC AACTGGTCGA ATTGCGCAAC
CCGCATCGCA GCGCCACCCG TCGCTTCGAT GCCTTGGGCC AGCTGCTGGA AGAAGTGCAG
GACGGGTTCC GGGTCGGCTA CGGCTACGAC GCGGTGGGCA ATCGCGTCTT GCGCGAGACC
TCGGCCGGCA ATCGCATCGC CTTCGGCTAT GACCTGCGCG ACCAGGTGGT GTCGGTGGCG
ATCAACGACG ACGCCCCGCT CCTGATCGAG CGCGACGCGC TTGGGCGCGC CACCCGCGAG
CAACTCAGCG CGCAGGTCGA ACGCCGTTTC GCCTACGACG GCCGCAGCCT GCTCACCGCC
CAGGCGGTGC TCAAGGACGC GGTGCCGCTG TTCGAAACCC ACTACGACTA CGATCGCGCC
GGCAACCTGA CCCACCGACG TCCCCCTAGT TTGAGTAGCA CCTCAGTTTG GAGTCCAATT
CCCTACCCCG AGGAGATTGG ACGTGAAGAA GCGCTTTTCC GAAGAGCAGA TCATCGGCTT
CCTGCGCGAA GCCGAGGCCG GCATGCCGAT CAGACCTGTG CCGGCGGCAT GGCTTCAGTG
AGGCGTCCTA CTACCTGTGG CGCAGCAAGT TCGGCGGCAT GA
|
|---|
| Protein sequence | MAYRYVEGDL VAAEDALGAP RRFVYRQHRL LQHTDRVGLS FYYDYDRQWR VVHSWGDGGL
YDYRFAYDDL LRETAVTDSL GHVSLVKFDE NRLPLCEIDP MDGVTVFAYD AVGRTVAVTD
PEGLCTRFDY DERGNLRTLT RPDGSTLRQT FDDDDRLIAV ADPDDHAWQQ RHDARGLLVE
QTDPLGATAQ YVYDDHGQLR AHTNARGATT RLEYDRYGLL AALIDALGQR SHFAHDALGR
LRSQYDPLGH ASTYEYDAKG RLVRLRSPGG GEVQCEYDAE DQLVRYVDEA GAQTRLQYVG
IGQIGKRLQA DGHTVEYRYD SEEQLVAVIN QRGERYELKR DALGRIVEEV DYWGQARRYD
YDACGRLTAT HDPLGQRIAY ATDKLGRIVR KTLADVRQPG QQLQEHFVYD RRGQLVELRN
PHRSATRRFD ALGQLLEEVQ DGFRVGYGYD AVGNRVLRET SAGNRIAFGY DLRDQVVSVA
INDDAPLLIE RDALGRATRE QLSAQVERRF AYDGRSLLTA QAVLKDAVPL FETHYDYDRA
GNLTHRRPPS LSSTSVWSPI PYPEEIGREE ALFRRADHRL PARSRGRHAD QTCAGGMASV
RRPTTCGAAS SAA
|
|---|
| |