| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5542 |
|---|
| Symbol | |
|---|
| ID | 1187234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6310816 |
|---|
| End bp | 6312435 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637396861 |
|---|
| Product | periplasmic glucan biosynthesis protein, putative |
|---|
| Protein accession | NP_795266 |
|---|
| Protein GI | 28872647 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGCA GAAATCTCCT GAAAGCGTCC ATGGCGTTGG CCGCTTACGG CAGCGTATCG
GCCTCAGGTC TTTATGCTGC GCGAGCACTG GCCGCAGCAG CCGATGGCGA GATCGAACAC
TTCGATTTTG CAGAGCTGCA AGCCCATGCC AAGAAGCTCG CAGGCAAAGG CTATGTGAGC
AACAAGCAAG TGCTGCCACC CGTCCTGGCG AACATGACGC CGCTGCAATT CAATGCCATT
CGCTACGACC CCAATCATTC GCTGTGGAAA GACGTCAACG GTCAGCTCGA TGTGCACTTC
TTCCACGTCG GCATGGGTTT CAAGACGCCG GTACGCATGT ACAGCGTCGA CCCGCAGAAC
AAGCAGGCGC GGGAAGTGCA TTTCCGCCAT GACCTGTTCA ATTACGAAAG CAGCGGCATC
GACAAGAACC TGGTCAAAGG CGACCTGGGC TTTGCCGGCT TCAAGTTGTT CAAGGCGCCC
GAAATCGCCA TCAACGACGT CGTTTCGTTC CTCGGTGCCA GTTATTTCCG GGCCGTGGAC
AGCAACAAGC AATATGGCCT GTCGGCCCGC GGCCTGGCTA TCGACAGTTA TGCCAAGCGT
CAGGAAGAAT TCCCCGATTT CACCAAGTTC TGGTTTGAAA CACCGGACAA GAATGCCACG
CGCTTTGTGG TGTACGCGCT GCTCGACTCG CCCAGCGCCA CCGGCGCTTA CCGTTTCGAC
ATCGACTGCC AGGCCGGTCA GGTGGTCATG GAAATCGATG CGCACATCAA TGCGCGTACC
GATATCCAGC AACTGGGTAT TTCGCCGATG ACCAGCATGT TCAGTTGCGG CACCCACGAA
CGGCGCATGT GCGACACCAT CCACCCGCAA ATTCACGACT CCGATCGCCT GTCGATGTGG
CGCGGTAACG GCGAGTGGAT CTGCCGCCCG TTGAACAACC CGGCCAAACC GCAATTCAGC
GCGTTCGCCG ACAAAGACCC GAAAGGCTTC GGTCTGGTGC AAAGCGATCA CGAATTCTCC
AGCTATCAGG ACACCGTGGT CTGGTACAGC CGTCGTCCAA GCCTGTGGGT CGAACCGATC
ACAGCGTGGG GTGAAGGCGA AGTCAGCCTG CTGGAATTGC CGACCACCGG CGAGACGATG
GACAACATCG TGGTGTTCTG GACACCGAAG ACGCCGGTCA AGGCCGGGGA TTCGTTGAAT
TACGGCTACA AGCTGTTCTG GAGCCCGCTG CCGCCGGTGA GCACGCCGCT GGCTCAGGTC
CACGCCACAC GTTCCGGCAT GGGCGGTTTC CTCGAAGGCT GGGCACCGGG CGAGCATTAC
CCGAAAACCT GGGCACGCCG CTTTGCGGTG GACTTCAACG GCGGCGGTCT GGATCGCTTG
CCGGAAGGCA CGGGCATCGA GCCTATCGTC ACCGTTTCTC ATGGCAAGGT GCAGGACTTC
AACATCCTCG TGCTGCCGGA CATCAAGGGT TATCGCATCA CCTTTGACTG GGTGCCGGAC
AGCGACTCGG TCGATCCGGT GGAAATGCGC ATGTTCATCC GTACCGGCGA CCGGACGCTG
AGCGAGACCT GGATGTACCA GTACTTCCCG CCAGCACTGG ACAAGCGCAA GTACCCGTAA
|
|---|
| Protein sequence | MNRRNLLKAS MALAAYGSVS ASGLYAARAL AAAADGEIEH FDFAELQAHA KKLAGKGYVS
NKQVLPPVLA NMTPLQFNAI RYDPNHSLWK DVNGQLDVHF FHVGMGFKTP VRMYSVDPQN
KQAREVHFRH DLFNYESSGI DKNLVKGDLG FAGFKLFKAP EIAINDVVSF LGASYFRAVD
SNKQYGLSAR GLAIDSYAKR QEEFPDFTKF WFETPDKNAT RFVVYALLDS PSATGAYRFD
IDCQAGQVVM EIDAHINART DIQQLGISPM TSMFSCGTHE RRMCDTIHPQ IHDSDRLSMW
RGNGEWICRP LNNPAKPQFS AFADKDPKGF GLVQSDHEFS SYQDTVVWYS RRPSLWVEPI
TAWGEGEVSL LELPTTGETM DNIVVFWTPK TPVKAGDSLN YGYKLFWSPL PPVSTPLAQV
HATRSGMGGF LEGWAPGEHY PKTWARRFAV DFNGGGLDRL PEGTGIEPIV TVSHGKVQDF
NILVLPDIKG YRITFDWVPD SDSVDPVEMR MFIRTGDRTL SETWMYQYFP PALDKRKYP
|
|---|
| |