| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5409 |
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| Symbol | |
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| ID | 1187096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6141738 |
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| End bp | 6143666 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396726 |
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| Product | ATP-dependent DNA helicase domain protein |
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| Protein accession | NP_795136 |
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| Protein GI | 28872517 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.274257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATCAGC GTCTTGAGCA GGTTTTTGGT TACACGCAGT TCCGGCCGGG CCAAGAGGCT
GCAATCAGTG CCGTGCTGGC CGGGCGCTCG GCTGCGGCGA TCTTTCCGAC CGGCTCAGGC
AAGTCGCTAT GTTACCAATT GCCTGCGTTG ATGTTGCCGC ATTTAACGCT GGTGGTTTCA
CCGTTGCTGG CGCTGATTCA GGATCAGCTT GCCTTTCTGC ATCGGCATGG CATTTCGGCG
GCGAGCATCG ATTCGGCGCA GAGCCGGGAT GATGTCGCGG ACGTCATGGC CAAGGCGCGC
TCCGGGGAAC TGAAAATCCT GATGATCTCG GTCGAGCGGC TCAAGAATGA GCGCTTCCGT
AACTTCATCG CTCAGGTGCC GATTTCCCTT TTGGTTGTCG ATGAAGCGCA CTGTATCTCG
GAATGGGGGC ATAACTTTCG GCCCGATTAC CTGAAACTGC CGGATTACCA GCGCGAATTC
AACATCCCTC AAGCCCTGCT GCTGACGGCG ACTGCGACGC CGCAAGTCAT TATCGACATG
CAGGATAAAT TCGCCATCGC CCCTGAAGAT GTAATCACCA CCGGTTTCTA CCGCGCCAAT
CTGCACCTGT GGGTCGAGCC GGTCAGCGGG CGTGACAAGA GGCAGCGCCT GGTCGAGTGG
CTCCATGAGC GACAGGGGCA GCCCACCATT GTCTACGTGA CCCTGCAAAA AACCGCCGAA
TACATCGCCG CGCACCTTGA ACAGAACGGT CTGCCTGCCA GCGCCTACCA CGCCGGGCTG
CCTACGGATC AGCGCGAATC CATCCAGAAG CGCTTCATGG GCGGCAGCCT CAATTGCATC
GTGGCGACCA TCGCGTTCGG GATGGGCATC GACAAGAGCG ACATTCGCAA CGTGGTGCAT
TTCGACCTGC CTAAATCCAT CGAGAACTAC AGCCAGGAAA TCGGACGGGC AGGGCGCGAC
GGTGCCGCTT CCGATTGCCT GGTGCTGGCC AATCGCGACA GCCTCAACGT ATTGGAAAAC
TTTGTGTACG GCGATACGCC GGAGCGCGAG GGAATTGCGC GCGTGCTGGA AGACCTGCTC
GGCGCGCGCC ACGACGGGCA ATGGGAGTTT CTGCTCGGGC CGTTGGGCGA TCTTGGCAAC
ATTCGCCAAC TGCCGCTGAA AACATTGCTG GTGCAACTGG AGCTGCGCGG GCTCATTGCG
TCACGTTACT CCTACTTCGC CGAGTACCGT TTCAAGTTCA TGCTCCAGCC GCACGACCTG
ATGGCGCGCT TTGAAGGCGA GCGGCGCGAA TTTGTTCAGG CGCTGATCGA CACCTCCAGC
CGGGCGCGGA CCTGGGCGAC GGTCAACTTC GACGCGATGT ACCAGCAATA CGGTGCCGAG
CGCGGGCGAG TGGTCAAGGC GCTGGATTAC TTTCAAGAGA AGGGCTGGAT CGAGCTTGAA
AGCAAGCAGA CGACCGAGGT GTACAGCCTG CTGCGCAGCG ATTTTGACCT GCAGGCCCTG
AGTACCGAGC TGTACGAGTA TTTCGCCCAC CACGAGGCCA CGGAAGTGGC GCGCATTCAT
GCAATGCTTG AAGTGTTCTC CAGCGATCAG TGCCTGACTC ATCGGCTGGC GCGCTACTTC
GGCGATCATA ATGCCCCTGG GCTTTGCGGG CATTGTTCGG TCTGCCACGG CCAGGTCGCC
CACCTGCCTG AACCGCCCGA GCTTGAACCG CTACCGAGCC GGGACTTTCA GCAACTGTGT
GGCGAGTTTA TCCACAAGCA CCAGGACTAC ACCGGCCAGC CACCCAGCGC AGAGTGCCTG
ACCCGTTTTT TGTGCGGCAT TAGCGTACCG TTGTTTACCA GGCTCAAGGC CCGCGCCACC
AGAGGTTTTG CCGTGCTCGA GGATTATCCG TATGCGCAGG TCAGGGCGTG GGTGCAGGGG
ATGCTCTGA
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| Protein sequence | MHQRLEQVFG YTQFRPGQEA AISAVLAGRS AAAIFPTGSG KSLCYQLPAL MLPHLTLVVS
PLLALIQDQL AFLHRHGISA ASIDSAQSRD DVADVMAKAR SGELKILMIS VERLKNERFR
NFIAQVPISL LVVDEAHCIS EWGHNFRPDY LKLPDYQREF NIPQALLLTA TATPQVIIDM
QDKFAIAPED VITTGFYRAN LHLWVEPVSG RDKRQRLVEW LHERQGQPTI VYVTLQKTAE
YIAAHLEQNG LPASAYHAGL PTDQRESIQK RFMGGSLNCI VATIAFGMGI DKSDIRNVVH
FDLPKSIENY SQEIGRAGRD GAASDCLVLA NRDSLNVLEN FVYGDTPERE GIARVLEDLL
GARHDGQWEF LLGPLGDLGN IRQLPLKTLL VQLELRGLIA SRYSYFAEYR FKFMLQPHDL
MARFEGERRE FVQALIDTSS RARTWATVNF DAMYQQYGAE RGRVVKALDY FQEKGWIELE
SKQTTEVYSL LRSDFDLQAL STELYEYFAH HEATEVARIH AMLEVFSSDQ CLTHRLARYF
GDHNAPGLCG HCSVCHGQVA HLPEPPELEP LPSRDFQQLC GEFIHKHQDY TGQPPSAECL
TRFLCGISVP LFTRLKARAT RGFAVLEDYP YAQVRAWVQG ML
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