Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5232 |
Symbol | |
ID | 1186917 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5952403 |
End bp | 5954370 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637396551 |
Product | pyocin/colicin protein, putative |
Protein accession | NP_794963 |
Protein GI | 28872344 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGATG AGCAAGAAAA ACATATATAT GTAAAATACT GGCCTATTCC AGACTTAGGG TCCGCAGACC GGGCAGCGGC CGAGGCAGCT GCTAATAAAG CGAGTGGTGG AGGTAATTCA GGCTGGAGCA TTGGAATCGG TGGTGGCGGC GGCGGACCCA GCACTACCGG CCTAGGCCCA GGGCGCGGTC GCCGAAGAGG TATCACTAAT AAACAGCTGA GACGTCTATT AAGGCAACAA GAGGCAGAGG CGCATGCGTT GGCCCAGCGG CAAGCGGCAG AACACGCGGC TCATCTCGCA CGAGTAGAAG CTGAGGCGCA TGCTCGGGCA ATGGCGGAAG CCGCCGAGCG AGAGCGCGTT GAAACGCAGG TACGCGCACA GGCCGAAAAA GATCAGGCAC ATCGACAGGC TCTTGAAACA CTGACAGCGT CCTATCCCTC GTTACAATCT GGATTGGCAC AAAACTACTT ACTGGCTTCT GCATCGCTGC CAAATGATCT TCAAAAAGAA ATAGCGTCAG GTCATGATCT AAATGCTGAT CCCCCACGCG ACGAGCAGAC TCTTGAGCTG ATACTTCAGA AAAAAACCAG GGTTAACTAT TTACTTGCAA TCAAACAACC GTTACTGGAC GAGCGTCGCG CTCAGGCTCT GAGTCTCACC GGTCAAGAGC TTGACCATGC TACACAAAAA GACCACCTGA ACTATCTGGT GTACTACAGC CAGGGTGATC CTCCACGTGT GCAGCAGGCC CATGAAGCGT GGGTAAACGC TTTATCTCAA ACCTACGAAG CAAAGCTTCT TGCCGAGTCG GTCACGCTGC TCAATGAACA ATCAGCAGCG CTTTCCATGC GCCATGCTGA ACTGTCGCTG GCCAATAAAC CGGCGAGTCA GGAAGCACGA CAGGCCGCTG GCATCGACAA GTTGTGGTCA GTTATTGCCC CCGCGTCAAC CACCACCGCA GCACCAGGCA TCAGAACCGT TGCGACCAAC ATCGCGAAGG ATCAACTCAT CAGGATTGCG ACCAGAACAT TGGGCAGCAA TCTGGTTACG TTGCTGGCGA TGTATCCACA ACCGTTGGGC GACGCAGAAC TGCCGCCCGC CGTTATCGCC ACACCTCTGT CGCAGCTCAA CCTGCCGCCG CATATCGATC TGCACTACCT TGCCAGCGTC AAAGGCACGC TGGATGTGCC TCATCGACTG ACATCCGATG AAGCTGGCAC AAGCGCTACA CGCTGGGTAG CTACGGACGG TGTGAAAGTT GGTACCAAGG TTCGCGTAAG AACTTTCACC TATAACGCAC AGAACAATTC CTACGAGTTT ATCCGTGACG GGGAATCGAC ACCGGCACTG ATATGGACGC CAATAGCACA ACCAGCGGAC AGTTCGACAA GCTCACCCGC AGGGCCACCC GCTTTGCCGG TAGATCCAGG CAACGTGGTG ACACCTTTTG TACCCGAGCT TGAAGCTTAC CCGGCGATTG ATCGAGATGA TCCTGATGAT TACATTCTCA TATCGCCGAT TGATTCAGGG CTGCCTAACA CTTACCTGTT GTTCAAGGAC CCGAGGTCGA TTCCGGGGGT TGCGAGTGGG TATGGTGAGC CGGTGACTGG AGTTTGGCTA GGGGACAGAA CGCGTGCAGA AGGCGCATCG ATTCCGACGC ATATTGCAGA TCAACTGCGC GGACGACGAT TTGGTGATTT TGCTTCACTG AGGAAAGCAA CCTGGATAGC CGTAGCCGAT GATCCCGAGC TAGGGAAACA GTCTACTCAG AATAACCTTG AAATAATGCG AGGTGGTGGT GCGCCCCACC CTAAACTCAG CGACCAAGCC GGAGGCCGTA CGAGATTTGA AATCCATCAT AAAAATTATA TTTCAAAAGG CGGCGCGGTT TATGACATCG ACAACTTGGT TATTATGACA TCAAGGCAAC ATATTGATCA TCACAGGAGC CAAAAAAATG ATCTTTAA
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Protein sequence | MADEQEKHIY VKYWPIPDLG SADRAAAEAA ANKASGGGNS GWSIGIGGGG GGPSTTGLGP GRGRRRGITN KQLRRLLRQQ EAEAHALAQR QAAEHAAHLA RVEAEAHARA MAEAAERERV ETQVRAQAEK DQAHRQALET LTASYPSLQS GLAQNYLLAS ASLPNDLQKE IASGHDLNAD PPRDEQTLEL ILQKKTRVNY LLAIKQPLLD ERRAQALSLT GQELDHATQK DHLNYLVYYS QGDPPRVQQA HEAWVNALSQ TYEAKLLAES VTLLNEQSAA LSMRHAELSL ANKPASQEAR QAAGIDKLWS VIAPASTTTA APGIRTVATN IAKDQLIRIA TRTLGSNLVT LLAMYPQPLG DAELPPAVIA TPLSQLNLPP HIDLHYLASV KGTLDVPHRL TSDEAGTSAT RWVATDGVKV GTKVRVRTFT YNAQNNSYEF IRDGESTPAL IWTPIAQPAD SSTSSPAGPP ALPVDPGNVV TPFVPELEAY PAIDRDDPDD YILISPIDSG LPNTYLLFKD PRSIPGVASG YGEPVTGVWL GDRTRAEGAS IPTHIADQLR GRRFGDFASL RKATWIAVAD DPELGKQSTQ NNLEIMRGGG APHPKLSDQA GGRTRFEIHH KNYISKGGAV YDIDNLVIMT SRQHIDHHRS QKNDL
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