| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5108 |
|---|
| Symbol | |
|---|
| ID | 1186793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5808719 |
|---|
| End bp | 5809174 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637396428 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_794840 |
|---|
| Protein GI | 28872221 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4706] Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAGT GGCAGCTCGC CGAACTCATC CCCCATGCTG GCGACATGAT CCTCATCGAT
CAGGTGCTGG ATTTCGACGA AGAGCAGATC AACACCCGCC TGACCGTGCG CGCCGATGGT
CTGTTCAACC AGCCGGACGG CAGCCTGCCC GCCTGGCTCG GCATCGAGCT GATGGCGCAA
AGCGTGGCGG CCTACGCAGG CTGTCAGGCG CGCAGCAAGG GCGAAGCGGT CAAGCTGGGC
TTTTTGCTCG GCAGCCGTAA GTTCGACTGC AACGTGGCGC GCTTCCCGGC TGGCAGCGAA
CTGCACATTC ATGCCATCCG CTCCCTGCAG GACGACAGCG GTATGGGTGT GTTCGAATGC
ACCCTCACCG GCCCGGACAT CACAGCGCTT GCCCGCCTCA ATGTATATTG CCCACCCAAC
ACTGCTGACT ACCTGGCTGA AGGAGCCCCG GCATGA
|
|---|
| Protein sequence | MIEWQLAELI PHAGDMILID QVLDFDEEQI NTRLTVRADG LFNQPDGSLP AWLGIELMAQ
SVAAYAGCQA RSKGEAVKLG FLLGSRKFDC NVARFPAGSE LHIHAIRSLQ DDSGMGVFEC
TLTGPDITAL ARLNVYCPPN TADYLAEGAP A
|
|---|
| |