Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5020 |
Symbol | |
ID | 1186705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5709754 |
End bp | 5711556 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637396341 |
Product | acyl-CoA dehydrogenase family protein |
Protein accession | NP_794753 |
Protein GI | 28872134 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGAGT CGCTGCTCAG TTCCCGAAAC CTGGCTTTCG AGCTGTATGA AGTGCTGGAC GCCGAAGGTC TGACGGGTCG CGAGCGCTTT GCCGAGCACT CGCGGGAAAC CTTTGACGCA GCCCTGGGGA CAGCGCGCGT CATCGCGGAA AAGTACTTTG CACCGCACAA CCGCAAGGCC GACGAAAACG AACCGCGCTA TGAACATGGC GAGGCGATTC TGATCCCGGA GGTCAAGCCT GCGGTGGATG CGTTTATTGC GGCGGGCTTT CTCAACGCAT CGCGTGATTT CCACGCAGGT GGCATGCAAT TGCCTACCCT GCTGTCGCAA GCCTGCTTTG CCCACTTTCA GGCCGCCAAC GTCGGGACCA CGTCCTATCC GTTTCTGACC ATGGGCGCCG CCAACCTGAT CGAAAGTTTT GGCAGTGACG AGCACAAACA ACGTTTTCTG CAACCGATGA TCGAGGGGCG CTTTTTCGGC ACGATGGCGC TGACCGAGCC CCATGCGGGT TCATCATTGT CAGACATCCG CACACGCGCC GAACTGGCAG ATGACGGTAC GTATCGGCTG CGTGGCAACA AGATATTCAT TTCCGGGGGC GATCATTCGC TGTCGGAAAA TATCGTGCAC CTGGTGCTGG CGAAACTGCC GGATGCGCCA GGTGGCGTCA AAGGCATCTC ACTGTTCATC GTGCCCAAGT TTCTGGTCAA CGACGACGGC AGCCTAGGCA AGCGCAATGA TGTGCTGCTT GCCGGGCTGT TTCACAAGAT GGGCTGGAAA GGCACTACCT CTACAGCGCT GAATTTCGGC GATAACGGTG AATGTGTCGG CTATCTGGTT GGCAAGCCGC ATCACGGTTT GAGTTACATG TTCCAGATGA TGAACGAAGC GCGTATCGGC GTTGGCCTGG GCGCTGTCAT GTTGGGCTAC TCCGGTTATC TGTATGCGCT GGATTACGCC CGGGATCGAC CTCAGGGTCG CCTGCCCGAC AGCAAAAGCC CCGAGAGCGC GCCCGTGCCG ATCATTCAGC ACGCTGACGT GCGGCGCATG TTGCTGACCC AGAAGGCTTA CGTAGAGGGC GCATTCGACC TGTGCCTGTA TGCCTCACGG CTGTTCGACG ACACCCAGAC CGGGGAAACC GAAGACGTGC GCAAGCACGC CCATGAGCTG CTGGACTTGC TGACCCCCGT CGTCAAATCC TGGCCTTCGG AGTTCTGCCT GAAGGCCAAT GAACTGGCGA TTCAGGTGCT CGGCGGTCAT GGTTACACCC GCGAGTATCC CGTTGAGCAG TACTACCGCG ACAACCGGCT CAATCCGATT CATGAAGGCA CTCACGGCAT CCAGTCACTG GACCTGCTCG GGCGCAAGCT CGCGCAGAAC GGTGGCACCG CCCTCAAGCA ACTGCTGCGC CTGATCGCCA ACACCTGCGA GCGCGCGCAG GCTCACGAGT CACTCGTTAA ACTGCGCCAG CCTCTGGAAC AATTGGTTGC TCGCTTGCAG GCTGTCACTC TGGGGCTGCT GGGCGATCTG GCGCAAGGCA GGATCACCAG CACACTGGCC AACTCGGCGC TGTACCTCAA GGCATTCGGT CACACGGTAA TCGGCTGGCG CTGGCTGGAA CAGGCAATCC GCGCCGAGGA AGGCCTGGGC AAAGGTAATT CGGCGGACAG TGATTTTTAC CAGGGCAAGT TGAAAGCAGC CCGGTATTTC CTGACGTGGG AAGTACCGGG CTGCCATCAT GAACTGGCGA TTCTGGAAAA CCGCGATGAC ACCTGTCTGG CAATGCGCGA TGACTGGTTC TGA
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Protein sequence | MSESLLSSRN LAFELYEVLD AEGLTGRERF AEHSRETFDA ALGTARVIAE KYFAPHNRKA DENEPRYEHG EAILIPEVKP AVDAFIAAGF LNASRDFHAG GMQLPTLLSQ ACFAHFQAAN VGTTSYPFLT MGAANLIESF GSDEHKQRFL QPMIEGRFFG TMALTEPHAG SSLSDIRTRA ELADDGTYRL RGNKIFISGG DHSLSENIVH LVLAKLPDAP GGVKGISLFI VPKFLVNDDG SLGKRNDVLL AGLFHKMGWK GTTSTALNFG DNGECVGYLV GKPHHGLSYM FQMMNEARIG VGLGAVMLGY SGYLYALDYA RDRPQGRLPD SKSPESAPVP IIQHADVRRM LLTQKAYVEG AFDLCLYASR LFDDTQTGET EDVRKHAHEL LDLLTPVVKS WPSEFCLKAN ELAIQVLGGH GYTREYPVEQ YYRDNRLNPI HEGTHGIQSL DLLGRKLAQN GGTALKQLLR LIANTCERAQ AHESLVKLRQ PLEQLVARLQ AVTLGLLGDL AQGRITSTLA NSALYLKAFG HTVIGWRWLE QAIRAEEGLG KGNSADSDFY QGKLKAARYF LTWEVPGCHH ELAILENRDD TCLAMRDDWF
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