| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4970 |
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| Symbol | |
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| ID | 1186655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5636765 |
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| End bp | 5641774 |
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| Gene Length | 5010 bp |
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| Protein Length | 1669 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637396291 |
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| Product | YD repeat protein |
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| Protein accession | NP_794703 |
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| Protein GI | 28872084 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCATCC TTTTAAAAGC CATCTACGCA GTATCCATGC CTGACGCCAA CCTGATCAAA
CTGTATCAGG ATGCCAACAC TGGCGAAGCC ATTCTCGCCG GGTTTCTACC TCAGCTTTAC
ATGGGAGCCG GTATTGTCGA CTGGAGTGCA TCCGTTACTG AGTGGAAGAA AGACAAAGCA
GGTCTCTTGA AAAAAATTGC TTACTGGGAG AGAGCGTTTG GTCAGTTGCT TCCGTCGGAA
GTGACATCAC CGCAAGGAGG AACTCTGTCT ATTGAATGGA GCCGTAACCA AGGCCAATTT
CTCCTTAAAA AAATATCAAG CGACGGTAAC GTCATCCTCT CTTCAACCTA CAGCGCGCCC
TCATCAGACA CCAGTACAGT TGAGATCAGC GTGTGGCCAA AAACGGATGA GGCTTACACG
GTCAGACTTG AACTTTCCTC GTACGCGTTA ACAGGTTTGA CACGAATAGA AAAAAACCTA
AAGGTCTCAC AAAAACTAAA ATACGGTTAC TGTGCGGACC CCACGCTGGA CCGGGTGCTC
AATAGAATCG AAGAGGAGGA TGGCTCGATT GAGCTTGTCA CATACCGTGA AGGGGGCATG
CCATTTCCAT ACTATCGACA GCCACCTCTT CCATGCGTAA CATTGCACAG CTTATTTCCC
GGCGCTTGCC AGAGCAATAT CACTGATCAC TATTTTTATT CAGGAACCAA TTATTTAGGC
TTTAGCGAGC CTCCTGATGC TCACCAAAAC CGCCTATATT ATGAACGGCT TGAACTTCGC
GAGTTAGTCG ACGATGAAGG CTATTATGTT CAGATTCTGC GTCAGAACCC GGACCATATT
GTCTCTACAC GGCACGCGTT CAATAAAAAT CATCTTCAAG TCAGAGAAGA TCTCCAGGTC
CAGTTTCAGG CCGAGAAGGT CATCAGTTGG GAGTTCGCCA ATGCAAGTCC GGGTGAGAAG
GTATTCGGGT TGCCCACTAA AATTACGACC GACTATACCG ACCTCAGCCA CCCGAACACA
GAAAGAACCA CTACCGTCCA GACACTGGCC TACAACAACA TCGGCCAACT CACCAAGAGT
ATCGCTGTCG ACGGGGTTGT CACTGAATGG TTGTATTACC CCGACACTGG CGGGCAAGGG
CTGGACATAT CGCTGATCGC CGAAAAACCG CTATCGAAAG ACTTGGTGAC CCTGACCTGC
CCGAAAGTAT CCGAAGGCTA TATGCCTCCG GTGAAAGTAG AGTACGTCCA TGATCCGGCC
TATCCGAAAA GTCAGCAAAT CACAGCCTAT GCTTACCAGG CCAGGGAAAA CCCGGTCAAT
CAACGCTCAG TCCTCGTGCC CTCAACAGTC GTTGTTTTGA CCGGGGTTAC GCTCGACACT
ACAACCATGC TGCCCTCATT AATGGAGGGT CGCAAAAACG CATTGATTGA ACAGCGGGTT
ATCAGCCGCT CGATTCCCGA CGTCGCGACC GAAAATACAA CTGCCTGGAA AGAATCCGTT
GTACAGAACT CCTGGCTGGG TATGCAACGG AATACGCTGA CCACAAGCAT GCTCTATGAC
GACAATCCAT CTGTTGGGCG CACCGTTCGC GCCGAGGCAC AGGGGAAGAT TATATCCAGT
CGGATTTTCT CTCGATTGAG CGGGCGACCG CTGTCAGAAA CCAGAGACGG CCTCGAATTC
CGATATGTTC ACGATAGTTT GGGGCGACTG GTGAGACAGG AACGGGGTAC CACCGAAGCG
GGTGCATGGA AAGCAGACGC GGTCGAAACG ACTGACTACA GTATTACCGC CGAGGGATTA
CAAGTCACTG TCACCGAAGC TGAGCAACAG GTACGCACGC TTTATGACGG TTTGCAGCGC
CCTGTCTGGG TGGCCATAAA GCGGACGATA TTGCCTGATT CGGCGTTCTG TGTGATCTCG
CGCATCGAAT ATGACGGTCC CGATGCCACC AATCAGACAC TATACGATTA CTTGCCCGGC
GGGTTACGCC GCACTAAAGA TGCCAGACCT GAGGCGGCTG TGGACGCCTC AAAACTGGCC
TGGATGGCCG ATTACACGCG GGAAGATGCA GGAATCCTTA TAAATGAGCA AGTTATCGGC
GCTGACAGCG GCGCCCAACT CATAAGGCAG CTTTCCGGAC GGAATTTAGA TAAGAGCCAC
ACCGCGCTAC TCGAAACACT CCGGCCATCT ACTGCCAGGG ACGCATCAAC CGACCGGACT
ATCGAGCGCA CGTTCGACGA TGAAAGGCGA TTGATAAAAA TCCGTACCAG CAACACCAGT
GAACATTGCA TCGAATATGA CGAGTTGGAG CGTGCAGTAG CTATCATCGC TCCCGACGGC
ACTCGCACAG AACGTAAGTA CCACCAACTC AGCGACTACA TCACACAACT CAACGTCGGA
TCCACTGTGC TTGGCACGCA AAAAATGACC GCCGCCGCCA GGCAGACTAC CGTAGGAGAG
TTAACGTATG AATTCCCGGG CGGGTCCGCC AGCACAGTCG TCAGGCCGGA TAAGACCCTG
CTCGAATCAG CCGTCTCAGC AGATGGACAC ACAGCAACTC TTTCGATCAA CAAGAAAGTT
CATACACAAC GGGTAATCTC TCAACCCAAC GTACTGACTG TCACTGTGGA CCCTGTATCG
GTACCCAGCG CCGAGGCGTG GTCCAGCCTT ACAAGTTCAC CGCAAAGTCT GGGGTTAACG
AGTATTACCC AAACATCGCC CCGAGGAAGT CGGCAGGCCG AAATGACCCG ATCACTGAAG
GGCAGGCTCT TGACGAACAC GGCAGTAGAT GGTCGCCAGA TGCGGGTATT TCGCGACTAC
CTGGACCGTG TAGTTCGTGT GATTCTTGGT GAATTGCACT ATCACTATCT CTGGTCCGCG
TTTGGTGAGC CGCTACAACG CACGGTGGTC AATCAGGCAA GCGGTGAACG CCTTGACGTT
CGCTTTACGT GGGACGCGTT CGGCCAAGAG ATAGCACGCG AATATACACT CAACAACAAA
CCGTTATTGG CCTTGACGAA CAGTTACCTG GCCAATGGCC AAGTGAGCAG TAAAACCCTG
ACGCGTGAAG GAGTGCTCCA ACGCACGGAA GGCTTCTCCT ACGATGCCCG GGATCGACTG
AACAGCTACG AATGCACGAC TGACGTTGCA GACTGGCCTC AGGATCAGGC TGGAAAGAGC
CTTTCGAAGC AGAGCTATGG TTATGACGAA TTACACAACC TGAGCGAATG CTCTTCGACC
TACGCCGATG GCAGCACCTG TATTCAAACA TACACGTATG ACACCGTTAA AAATCCGACT
CGAAGACTGT CTGTAAAAAC CGAATTGAGG TCAGGCTCCC AAACAACATC GACACAGACG
GCTACGCTCG CTTACGACGC CAACGGCAAT CAAACCACTG ACGAATCAGG ACGCACGCTG
GCCTATACGC CACTGGGGCA ATTGGCGAGC GTTAAAGACA ACGACGGCAA ACTGTTGACT
CGCTATAGTT ATGATGCATT TGGCCGTCTT ATATCTCAAT ACATCGGCGC CACAAAGCAC
ACCTGTGAGC TGCTGTATGA CGGCACGCAA CTGACGGGAG AAGCATGGTT CGACGATGCG
AACAGGGAAT TCAAACGTAT CCTGTTCAGC GAGGATATGG TACAGCAAAC CTGTATTGGC
GAAACCGTGC GGTCAGACTT CGTCCTCACC GACCCCGGCA GCGGTGTCGT TGGATTTAGC
GCGCATGATG GAACGGCTGG AGTAAAACTG CACCCACTTG GCTATACCCC TTATGGCGAG
AGCACCAACC TCGATAGCGG ATGTCGGCTG GGCTTCAATA GCGAGCGTAT CGACCCAGTA
TTGGGCTGGT ATCACTTGGG CAACGGCTAC AGGACGTATA GTCCGGCACA GCGACATTGG
TTGCAACCCG ACAGCTGGAG CCCCTTTGGA GCAGGCGGCA TCAACAATAC CGCCTACTGC
GCAGGCGACC CGGTCAACCT GTTCGACCCC AGCGGGCATG TAATGATCAG CCGCTGGGGC
GCCAGTAATA TGATCAGTGA CTTGACGAAG GCATTACAGG AAACCAGTCC TCAACCACTG
GGCCATTTCT GGAGAGGCCT TGCGGTCAAC GCAAGCGTCG CCGTCGCGGG CGTCCTGATG
GTCCCCCTCA CAGGAGGGTC TTCTTTGGGA TTTGCTGCTG GCGTCCTCGC GACAACATTG
GCTGTTGCTT CCGCAGGTCT TGATATAGCC AGTTACGTAC TGGAAGACGT CAACCCCGAA
TTGGCCCGAA AACTGGGAAC CGCCGCTACC GCTCTGGGTT TTATATCGAA TGCCCCCTTT
AGAGCGGGAT TAAGATTGGG CGGTCGGCTG CTACGCTGGA CGTCAAGCAG GACCGGCAGA
CTTATCTCGA GGGTTGAGTC CATATTTACA AAGGGACCAA AGCTAAAGCT CCTTACCGGA
ACGATAAAGG TACTCAAGCC AGGGATGTCG TCTTATGGAG CAAGCAACGT TACCCGCTGG
GCACCAGGCA AGCTTGATAA GTTTGAAAAA CTGGAAAATG CGCTCTTCAT GACAGTAGAC
AAGCAAGGAA AACGCGTTAC GTTTATGGCT CACGGTGTGA AGCCTGACGA CGTCGGGGAC
GCAGCAATGA TGGCGATTGA GGAATACAGC GGAAGCGGGC CTTACAGTGG AAAATCATTT
TCAGCCTATT CGTTTTTTGA TTTCCTGAAA TCAAAAAAAG TAGACCTCAA TAAATATGAG
AAAGTACGGC TGATAATGTG TCACTCAGCA GACGGGGGGG AAAAATCATT CGCCGCCACA
TTTTCAAAGC TCACAAATAA ACCGGTAAAG GGCTATGAGG GAGTGGTTGA CACGCGTTTT
GGCATGGAAG ACTCAATGGA CGCTTTCCGA GGGGTAAGAG GCCCAGACCA AATCAAGGCA
GTTCAAGAGC AACTGAAATC AACTCCACAA GAAACGATAA AAAAAGTGAT TAGTAATGAA
CCGGGCTTCT CTAAGGAAGG TCTGAAGTAG
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| Protein sequence | MIILLKAIYA VSMPDANLIK LYQDANTGEA ILAGFLPQLY MGAGIVDWSA SVTEWKKDKA
GLLKKIAYWE RAFGQLLPSE VTSPQGGTLS IEWSRNQGQF LLKKISSDGN VILSSTYSAP
SSDTSTVEIS VWPKTDEAYT VRLELSSYAL TGLTRIEKNL KVSQKLKYGY CADPTLDRVL
NRIEEEDGSI ELVTYREGGM PFPYYRQPPL PCVTLHSLFP GACQSNITDH YFYSGTNYLG
FSEPPDAHQN RLYYERLELR ELVDDEGYYV QILRQNPDHI VSTRHAFNKN HLQVREDLQV
QFQAEKVISW EFANASPGEK VFGLPTKITT DYTDLSHPNT ERTTTVQTLA YNNIGQLTKS
IAVDGVVTEW LYYPDTGGQG LDISLIAEKP LSKDLVTLTC PKVSEGYMPP VKVEYVHDPA
YPKSQQITAY AYQARENPVN QRSVLVPSTV VVLTGVTLDT TTMLPSLMEG RKNALIEQRV
ISRSIPDVAT ENTTAWKESV VQNSWLGMQR NTLTTSMLYD DNPSVGRTVR AEAQGKIISS
RIFSRLSGRP LSETRDGLEF RYVHDSLGRL VRQERGTTEA GAWKADAVET TDYSITAEGL
QVTVTEAEQQ VRTLYDGLQR PVWVAIKRTI LPDSAFCVIS RIEYDGPDAT NQTLYDYLPG
GLRRTKDARP EAAVDASKLA WMADYTREDA GILINEQVIG ADSGAQLIRQ LSGRNLDKSH
TALLETLRPS TARDASTDRT IERTFDDERR LIKIRTSNTS EHCIEYDELE RAVAIIAPDG
TRTERKYHQL SDYITQLNVG STVLGTQKMT AAARQTTVGE LTYEFPGGSA STVVRPDKTL
LESAVSADGH TATLSINKKV HTQRVISQPN VLTVTVDPVS VPSAEAWSSL TSSPQSLGLT
SITQTSPRGS RQAEMTRSLK GRLLTNTAVD GRQMRVFRDY LDRVVRVILG ELHYHYLWSA
FGEPLQRTVV NQASGERLDV RFTWDAFGQE IAREYTLNNK PLLALTNSYL ANGQVSSKTL
TREGVLQRTE GFSYDARDRL NSYECTTDVA DWPQDQAGKS LSKQSYGYDE LHNLSECSST
YADGSTCIQT YTYDTVKNPT RRLSVKTELR SGSQTTSTQT ATLAYDANGN QTTDESGRTL
AYTPLGQLAS VKDNDGKLLT RYSYDAFGRL ISQYIGATKH TCELLYDGTQ LTGEAWFDDA
NREFKRILFS EDMVQQTCIG ETVRSDFVLT DPGSGVVGFS AHDGTAGVKL HPLGYTPYGE
STNLDSGCRL GFNSERIDPV LGWYHLGNGY RTYSPAQRHW LQPDSWSPFG AGGINNTAYC
AGDPVNLFDP SGHVMISRWG ASNMISDLTK ALQETSPQPL GHFWRGLAVN ASVAVAGVLM
VPLTGGSSLG FAAGVLATTL AVASAGLDIA SYVLEDVNPE LARKLGTAAT ALGFISNAPF
RAGLRLGGRL LRWTSSRTGR LISRVESIFT KGPKLKLLTG TIKVLKPGMS SYGASNVTRW
APGKLDKFEK LENALFMTVD KQGKRVTFMA HGVKPDDVGD AAMMAIEEYS GSGPYSGKSF
SAYSFFDFLK SKKVDLNKYE KVRLIMCHSA DGGEKSFAAT FSKLTNKPVK GYEGVVDTRF
GMEDSMDAFR GVRGPDQIKA VQEQLKSTPQ ETIKKVISNE PGFSKEGLK
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