Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4340 |
Symbol | |
ID | 1186021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4891381 |
End bp | 4894203 |
Gene Length | 2823 bp |
Protein Length | 940 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637395682 |
Product | insecticidal toxin protein, putative |
Protein accession | NP_794096 |
Protein GI | 28871477 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTCGA TCACGCACAC CAACACGCCG CAATTGGCGG TCAGCGATTC ACGGGGTCTG CCGGTACGCA GTGTGCAGTT CTATCGTGGC GCTGATGGTC AGCCTGTTGA CGCGAGGGTG ACGCAGCACT ATTTCGACAA GGCCGGGCGA CTGATCGCCA GTCGCGATCC ACGTTTTTCC AGTCGTTTGA AATACGGTGT CTGTGCGCCT GTGAACCTGA TGCAAATCGT CAGCTTGTCC GGGGCTTTGC TGTTATCGAA AAGTGTCGAT TCAGGTTGGC GGGTGAGCCT GAACGGCGAA GCGGGGCAGT TAGTCGACAG CTGTGACGGA CGTGACAACC CGCGCCAGAT CGAATACGAC GGGCTGTTGC GCCCTTTGGC GATCAACGAA TCAGGCCGAA TGACCGAGCG CTTCACTTAT GGCGGGCCTG CCACTGCTGA GCATAACCAG TGCAATCAAC TGATTCGCCA TGACGATACG GCAGGCTCGC GCTTGCTGCG GGACTATGGA CTGTCGGGTA GGGCGTTGAG CGAAAAAAGG TACTTCCTGC AGTCGCCCGA CAGCCCGGAC TGGCCACTTG CCGAGCCTGA TCGTGATGCA CTGCTCGAGC CGGTCGGCCT GCAGACGCGC TGGGCTTTCA ACGCGCAGGG CGAGGACCTG GCGCAGACTG ACGCAAACGG TAATGTCCAG CGTTTCAGTC ACGGTGTGGC TGGGCAACTG CACGCTGTTG AACTGACCCT GGCCAATACG GCACAGCGGC AAACGCTGGT CAGTGCAATT CACTACGACG CGTTCAATCA GGCCGAGCAG GAGACGGCAG GAAATGGTGT GGTCAGTCGC TATGTGTATG ATCAACAGGA CGGTCGGCTG ACTGAGCTCA GTGCGCTATC TGCCGACGGC TCAGTGTTGC AAAAACTGAA CTACAGCTAT GACCCGGCAG GTAACGTTCT ACTCATCAAC GATGCCTCGC AACCAGACCG GTATTGCGGC AATCAGCGTA TCGAGCCGAT AAACCGTTAC TGTTACGACA CGTTGTATCA GTTGATCGAA GCCACGGGGC GGGAGGTCAG AAACGGGGCC AGCCATGGTC CGGCGCTACC CGGTCTGCAA CCTCTGCCGA CGCTCGATCC TTGCCAGGTC AGCAACTACA CACAGCGTTA CAGCTACGAC GCTGCGGGTA ACCTGCTGCA AATGCGCCAC GAAGGCGCGC ACAACTTCAC CCGCAACATG CACGTTGATC CCGACAGCAA TCGCAGCCTG CCCGACAATG ACAGGTATGT GGATTTCGCC ACGAGTTTTG ATGCCAACGG CAATCTGCTG CAACTCGTGC GTGGGCAGAC CATGAGCTGG GATGTGCGTA ATCAGTTGCG GCAAATCACT ACCGTGCAAC GTGAAGACGC ACCGAATGAT GAAGAGCGCT ATGTATACGA CGGCCAGGGC CAGCGCTGCC GCAAGATCAG CACCGCGCAG GCATCAGGTC GCACACTGAC CAATGAAGTT CGCTACCTGC CGGGACTGGA AGTTCGGACC ACGGCCGATG GAGAAACTCT TCACGTCGTT ACGGCTCAGG CGGGTCGCAA CAGCGTGCGG GTGTTGCACT GGGAAGCCGG AAAACCAGGC GCTATTGCGA ACGATCAGGT GCGTTACAGC CTGGGTGATC ATCTGGGCTC GAGCACGCTG GAGCTTGATC AGCAAGGCGG CCTGATCAGC CAGGAAAGTT ATTACCCCTT TGGCGGCACG GCCTGGTGGG CGGCGCGTAG TGCAGTGGAG GCCAAGTACA AAACAGTGCG TTATTCGGGT AAAGAGCGCG ATGCCAGCGG GCTTTATTAT TACGGGTTCA GGTATTACGC GCCGTGGTTG CAGCGGTGGA TCAATCCTGA CCCGGCGGGG GATGTGGATG GGTTGAATCT GTACAGGATG GTCAGAAATA ATCCGCTTGT TTACGTTGAT GCGAAGGGCC AGCAACCTGA ACCTGTTCCA AAAACTATTC ACCAGATCTG GATAGGTGAA AACAAGAATG CCTTGAGAGC TCAGGTTAGC AATATCAACA GAACCGTTGA AATGGCTTGG GGGTATAAAG TGAAGTTGCA TCTGGAAACG AGGACGCCGG AAGCTTATTC GGAAATCGAA AAGGATCTGA GATCCGAAGT GGTTCTGCTT CCTGATTCCC AGGTTTTTCA AAACTTCAAG GAGAAGCCGC TTTATGCGGC CTATGAAGAT TTCCGAAGAA ACAATCAGAA TTACGCTTTC GCGGTAGACG TTTTACGTAT GCATACCGTT CATGAGTTGG GCGGGATTTA TTCAGATGTC GATGACGTTT ATGCAGGTGC GGAGACTGGC GGAATGACGC AGTTGGGGGA TAATCCGCTG TTTGCAGAAC CTGATGAGGT TTTGACGCTG GATCCTGTTC ATGTCCCTTG GGAGCCCCAG AATTCTGTTG AAAGTTTTAT GGTCAATAAC AGCTCATTTG CCGCTCATTC AGGTGCAGGC GTCTTACTTG ACATGATGGG GGAAGGAGCG AAACGATATG ATGAAGCCGT TGAGGGCGGA AGTTATCCGG ATCCGACGGG CATGAACGGT ATAGGTCTAA GTCTGCTCTG GAATCCTAAC CCGGCAGTAA GAGTTCGAAC GTTATCGAAT GTAGTAGGCC CCGGCTTGTT TACAGACACA CTGCACGCTT CGGACACAGC ATACGGTGAG CTTTTTAGTA ATCTGAAAGG CGTCGTCTTT CAAAAACAGC CGTTCACGTT TGCCGACCAA ATGGCCAGGA AGATGCCGCT GCATCGGCAT ATAAAAAGCG GCGCGGCGCA AACCTGGCGC TGA
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Protein sequence | MSSITHTNTP QLAVSDSRGL PVRSVQFYRG ADGQPVDARV TQHYFDKAGR LIASRDPRFS SRLKYGVCAP VNLMQIVSLS GALLLSKSVD SGWRVSLNGE AGQLVDSCDG RDNPRQIEYD GLLRPLAINE SGRMTERFTY GGPATAEHNQ CNQLIRHDDT AGSRLLRDYG LSGRALSEKR YFLQSPDSPD WPLAEPDRDA LLEPVGLQTR WAFNAQGEDL AQTDANGNVQ RFSHGVAGQL HAVELTLANT AQRQTLVSAI HYDAFNQAEQ ETAGNGVVSR YVYDQQDGRL TELSALSADG SVLQKLNYSY DPAGNVLLIN DASQPDRYCG NQRIEPINRY CYDTLYQLIE ATGREVRNGA SHGPALPGLQ PLPTLDPCQV SNYTQRYSYD AAGNLLQMRH EGAHNFTRNM HVDPDSNRSL PDNDRYVDFA TSFDANGNLL QLVRGQTMSW DVRNQLRQIT TVQREDAPND EERYVYDGQG QRCRKISTAQ ASGRTLTNEV RYLPGLEVRT TADGETLHVV TAQAGRNSVR VLHWEAGKPG AIANDQVRYS LGDHLGSSTL ELDQQGGLIS QESYYPFGGT AWWAARSAVE AKYKTVRYSG KERDASGLYY YGFRYYAPWL QRWINPDPAG DVDGLNLYRM VRNNPLVYVD AKGQQPEPVP KTIHQIWIGE NKNALRAQVS NINRTVEMAW GYKVKLHLET RTPEAYSEIE KDLRSEVVLL PDSQVFQNFK EKPLYAAYED FRRNNQNYAF AVDVLRMHTV HELGGIYSDV DDVYAGAETG GMTQLGDNPL FAEPDEVLTL DPVHVPWEPQ NSVESFMVNN SSFAAHSGAG VLLDMMGEGA KRYDEAVEGG SYPDPTGMNG IGLSLLWNPN PAVRVRTLSN VVGPGLFTDT LHASDTAYGE LFSNLKGVVF QKQPFTFADQ MARKMPLHRH IKSGAAQTWR
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