Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4283 |
Symbol | pnlA |
ID | 1185964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4822443 |
End bp | 4823687 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637395625 |
Product | pectin lyase |
Protein accession | NP_794039 |
Protein GI | 28871420 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3866] Pectate lyase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAAGCT GCTTCATGCA ATGCGCGGCT GCCATGTTGC TGACGCTTGC AGGGCCACAG TACTTACCAG CGGCCGACCT GCCTGAAGGG TTTGCCAAAG GCGTCACCGG TGGCGGGTCG GCCGCCGACG TGCATCCATC GACACTGGAC GACCTTCGAT CAGCTTTGTG TGCGTCACAT GACGCGCACG GTGCGTGCAC AGACCAAACC CCAAGAGTCA TTGTGCTGGA CCACCTGTTC GACTTTCGTG GCAGTGTCGT TGCCAACGGC AGCGCCGAAA CCACTGCGCC CGGCTGTGTC GTCAAGCCCT GTGCGCAGGG TGGAGAACAG CTTGCACTCA ATGGCGCCAA TGACTTCTGC CAATCCAGGC CAGCGGTCAT GGTGACCTAC GACAATGCCG GGTTGAAGCC ACTGAAAGTC GGCTCGAACA AGACGCTGAT CGGTGCAGGC ACCAAGGCGG GCATTGCAGG CACAGGGCTG TTCATCGGTG ACGGCGCGCA CAACGTGATT GTGCGTAACC TGACGCTTTC AGACATCAAC CCCAGTGTCG TATGGGGTGG AGATGCGCTC ACCCTGAACA AGGCCGATGG CGTATGGATC GACCACAACA CCTTTGCCCG CATCGGCAGG CAAATGATCG TGACTGGCTG GGGCACCGCT TCACACGTCA CTATTTCCAG CAATGAATTC GATGGCCGAA CGCCTTACTC ATCGACCTGC GATGGCCATC ATTACTGGGT CTGGCTGTTC CTGGGCAGCC AGGACACGCT GACGTTATCG AGAAACTACC TGCACGACAC GTCCGGCAGA GCACCGCATT CCGGCGGAAT GAAAAATGCT CAAATCCGCG CTCAACTGGT CAACAACGTG TTTCAGCGCA TGACCTACCA AGGCGCAATC ATGTCGCGTA CCTCATCCTC GCAGTTGCTG GTAGAGGGGA ACGACTTCGA AAACGTAGCC CATCCCCTGT TCAACGACAC GGACCAGCCG GGTACCGCAT TCGCCTTGTT CGAGCCGGTT TCAGCGGCTG CGAACAGCAC GTGTATGAGC GTGATCGGCA GGCTTTGTAT CGCGAATCAG CAACGAGCCA GTGGCGAAGA CTATCGCCCG CAGGACGCCT CCGCTTTGCA GGCGTTCCGG GATTATCGGC AATACCTGGT GGTGCCGGTG TCGGCACAAG AGGCACGGGC GCGGGTGCCA GGGGAGGCGG GGGCGGGGAA GGTGGGTGTT GGTTTACGGC CTTGA
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Protein sequence | MKSCFMQCAA AMLLTLAGPQ YLPAADLPEG FAKGVTGGGS AADVHPSTLD DLRSALCASH DAHGACTDQT PRVIVLDHLF DFRGSVVANG SAETTAPGCV VKPCAQGGEQ LALNGANDFC QSRPAVMVTY DNAGLKPLKV GSNKTLIGAG TKAGIAGTGL FIGDGAHNVI VRNLTLSDIN PSVVWGGDAL TLNKADGVWI DHNTFARIGR QMIVTGWGTA SHVTISSNEF DGRTPYSSTC DGHHYWVWLF LGSQDTLTLS RNYLHDTSGR APHSGGMKNA QIRAQLVNNV FQRMTYQGAI MSRTSSSQLL VEGNDFENVA HPLFNDTDQP GTAFALFEPV SAAANSTCMS VIGRLCIANQ QRASGEDYRP QDASALQAFR DYRQYLVVPV SAQEARARVP GEAGAGKVGV GLRP
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