| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3916 |
|---|
| Symbol | |
|---|
| ID | 1185589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4431331 |
|---|
| End bp | 4431828 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395268 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_793687 |
|---|
| Protein GI | 28871068 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.919251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCAACA AACGGTACGC CTGCATCGGT CTTTATAACC CCAAGTCCCC GGAAAACGTC
GGTTCAGTGA TGCGTGCCGC AGGCTGCTAT GGCGTGGCGT CGGTGTTCTA TACCGGTAAG
CGCTACGAGC GTGCCCGGGA CTTCATCACC GACACCAAGA AAATCCATCA GGATATCCCG
CTGATCGGCA TCGAGGACCT CAAGAGCATT CTGCCACTGG GCTGCATCCC GGTTGCCGTC
GAACTGGTGG AAGGTGCCCG CGCGCTGCCG GAATACACAC ACCCGGATCG CGCGCTGTAT
ATCTTCGGCC CGGAAGACGG CTCGCTGGAC CAGGAGATCC GCGACTGGTG CGAAGACGTG
GTCTACATCC CGACCGAGGG CTGCATGAAT CTGGCAGCCA CCGTCAACGT CGTGCTTTAT
GACCGCATGG CCAAAGGCAT CAATACCCGT TCAGGGCCGC AGTTCGGTCG CGAGAAAGTT
GGCCCGGCCA GCGACTGA
|
|---|
| Protein sequence | MANKRYACIG LYNPKSPENV GSVMRAAGCY GVASVFYTGK RYERARDFIT DTKKIHQDIP
LIGIEDLKSI LPLGCIPVAV ELVEGARALP EYTHPDRALY IFGPEDGSLD QEIRDWCEDV
VYIPTEGCMN LAATVNVVLY DRMAKGINTR SGPQFGREKV GPASD
|
|---|
| |