Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3886 |
Symbol | |
ID | 1185557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4398715 |
End bp | 4400487 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395236 |
Product | EAL domain/GGDEF domain protein |
Protein accession | NP_793657 |
Protein GI | 28871038 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00288669 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCATCA CTGAACAGCT GAGCGCACTG AGTTCCATTC TGGCTCGTAG TGATTTGCAC AGCCTGTTCC AGCCCATCGT CTCGCTGTCG GAGCGCCGGA TTCTGGGTTA TGAAGCCCTG ACGCGCGGCC CGTCCAACAG CCCGCTGCAC TCACCCCTCA ACCTGTTCGC GATTGCCCGT CAGGCGGGCC GTCTGAGTGA GCTTGAATTG AGTTGCCGTG AAAGCGCCTG CCGTCGTTTC AGTCAGCAGA AATTGCCGGG CAAGCTGTTT CTCAACGTCT CTCCCGAATC ACTGCTGGAA ACCTCCCATC CGCCGGGTCG CACGCTGGAA ATGCTGCGCC GTTACCAGAT CGCGCCCAAG GATGTGGTGA TTGAGTTGAC CGAGCAGATG CCCACCGATG ATTTCGACCT GCTGTACAAC GCACTGCACC ACTACCGTGA CATGGGCTTT TCAATTGCTC TGGACGATTT GGGCGCGGGT TATTCCAGCT TGCGGCTGTG GTCGGAACTG CGCCCGGACT ACGTGAAGAT CGATCGGCAC TTTATCGACG GCATTCACCA GGATGCGGTG AAACGCGAGT TCGTCGGCTC CATGCTGCAA ATGGCCAAGG CTTCCCGCGC GACCGTGATC GCCGAGGGCA TCGAGTTGCC GGAAGAACTG GCAGCCCTGA AAGACATGGG CGTGGACCTG GTTCAGGGCT ATCTGCTGGC GCGCCCGCAG GAGCGTCCGC CACGCGACAC CCGAACCATG CTGCCCAAGG CAGAAACCGC CAGCGCCCCG TTGAACGAAG AAGCAGCCGA CCTTTCTGCC CTGCTCAACC CGCAGCCTTC GGTGAGCCAG TCCACGCCCA CTGCACAAGT GCTTGAGGCG TTCCGCAGGC AGGCCAACCT CAATTCACTG GCGGTGCTGG ATGATGAAGC CAGGCCCTGC GGGATTGTCC ATCGGCACTC GCTGTCCGAA GCCCTGCTCA AGCCATTCGG CACCGAGCTG TTTGCCCGTA AACCGATCAG CCGCCTGATG AGCGATGACT TTCTGGCGGT CGAAGTCAGC CAGTCATTGC AGCAGGTCAG CCGCTTGCTG ACCAGCCGTG CCCGGCAGCG CATCGAAGAG GATTTCATCA TTACCGCCAA CGGCGCTTAT CTGGGGCTCG GCCGGGTGAT CGATGTGCTC AAGCTGATTA CCGAGATGAA GATCCAGCAG GCGCGCTATG CCAACCCGCT CACCCTGCTG CCTGGCAACG TGCCGATTCA GCAATGCCTG ACCCGCCTGC TGCAACAGGG CCGTGAGTCG ATGATCTGTT ACGTGGACAT CGACAGCTTC AAGCCCTTCA ACGACATCTA CGGTTACGCC CGTGGAGACG AAGTGCTGCT GTGCCTGGCG CAGTGCCTGA ATGATCGCGT TGATCCGAGC CGGGACTTTG TCGGGCATAT CGGCGGGGAT GACTTTCTGA TGGTGTTAGG CTTCGAGGAC TGGGAACGGC GTCTCAAAAA CCTGCTGGAT GACTTCCAGA ACCAGTGCCG CCGGTTCTAC CGCGCAGAAC ACCTGGAAGC CGGCTGCTTC ATCGCCCTTA ACCGTCAGGG GCAACGTCAG GACTTCCCGC TGCTGTCGCT GTCGATTGGC GTGGTGCACC TGCACGAAGA GAGCTGCGCC TATATCGACG CCAGCCAGTT GGCCGACCTG GCCTCACAAG CCAAACACTT CGCCAAAGAC GTGGCTGGCG CGAGCATTCA TGTCATCGAC TCGACACGAA TGGATCTACT GATGCAGGCG TGA
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Protein sequence | MTITEQLSAL SSILARSDLH SLFQPIVSLS ERRILGYEAL TRGPSNSPLH SPLNLFAIAR QAGRLSELEL SCRESACRRF SQQKLPGKLF LNVSPESLLE TSHPPGRTLE MLRRYQIAPK DVVIELTEQM PTDDFDLLYN ALHHYRDMGF SIALDDLGAG YSSLRLWSEL RPDYVKIDRH FIDGIHQDAV KREFVGSMLQ MAKASRATVI AEGIELPEEL AALKDMGVDL VQGYLLARPQ ERPPRDTRTM LPKAETASAP LNEEAADLSA LLNPQPSVSQ STPTAQVLEA FRRQANLNSL AVLDDEARPC GIVHRHSLSE ALLKPFGTEL FARKPISRLM SDDFLAVEVS QSLQQVSRLL TSRARQRIEE DFIITANGAY LGLGRVIDVL KLITEMKIQQ ARYANPLTLL PGNVPIQQCL TRLLQQGRES MICYVDIDSF KPFNDIYGYA RGDEVLLCLA QCLNDRVDPS RDFVGHIGGD DFLMVLGFED WERRLKNLLD DFQNQCRRFY RAEHLEAGCF IALNRQGQRQ DFPLLSLSIG VVHLHEESCA YIDASQLADL ASQAKHFAKD VAGASIHVID STRMDLLMQA
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