Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3247 |
Symbol | |
ID | 1184905 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3670593 |
End bp | 3671759 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394598 |
Product | mandelate racemase/muconate lactonizing enzyme family protein |
Protein accession | NP_793031 |
Protein GI | 28870412 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.123279 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGGTCA CCATGAACAT TACCTCGGTC AGTGTCGACG TCTTTTCCTT CCCTTCGCGC CGCGCTGTAG ACAGCGCGGG CCACGCTCAT CCCGGCGAAG AAAAACCGGT CAGAATGGCC ATGCTGCGCA TCGCTTGTGA CGATGGCAGC GAGGGGTTTT CCTTCGGTCC GCCGGAATTG ATTCGCCCGC ACATCATCGA GTCGTTCGTC AAGAAAGTGC TGATCGGCCA GAACCCGATT AACCGCGAGA AAATCTGGCA GGAACTGGCC CACTGGCAAC GTGGCAGCGC CAGTCAGTTC ACCGACCGTG CGTTGGCACT GGTGGAGCAG GCATTGTGGG ATCTGGCCGG ACGCGCCTTG AAACTGCCCG TGCACAAACT GCTGGGCGGC TATCGCGACA AGGTGCTGGC CTACGGCTCG ACCATGTGCG GCGACGACCT GCCCGGCGGG CTTTCCACGC CGGATGAGTA TGGGCAATTT GCCGAAAAGC TGGTTCAGCG CGGCTACAAG GGCATCAAGC TGCACACCTG GATGCCACCG ATTTCGTTTG CGCCAAACCC GCGCATGGAT GTCCAGGCCT GCGCCGCTGT GCGCGAAGCA GTTGGGCCGG ACATCGCCCT GATGCTCGAC GGCTACCACT GGTACAGCCG CACCGACGCG CTGTTTATCG GTCGCCAATT GCAAAAGCTC GACTTCGCCT GGTTCGAAGA ACCGATGATG GAAGACTCCG CCGAATCCTA TGCCTGGCTG GCGGCCAATC TGGATATTCC TGTGCTCGGC CCGGAGAGCA TTGCCGGCAA GTATCACAGC CGCGCCAGTT GGGTAACCAA CAAGGCCTGC GACATTCTGC GTGCCGGCGT GGCGGGCGTC GGCGGCATCG GGCCATGTTT AAAGGTCGCG CATCTGGCCG AGTCGTTCGG CATGGACTGT GAAGTCCACG GCAACGGCGC TGCCAACCTG GCCGTAGTAG GCGCAATCAG CAACTGCCGC TGGTACGAGC GCGGCCTGCT GCACCCGTTT CTTGATTACG ACGACGTGCC CGCTTACCTC AACACCCTCG TCGACCCGAT GGACAGCGAC GGTTTTGTGC ACCTCTGCGA AAAGCCGGGG CTGGGCGAAG ACATCAACTT CAGCTATATC GAGACCCACA CCGAACAACG CTACTGA
|
Protein sequence | MKVTMNITSV SVDVFSFPSR RAVDSAGHAH PGEEKPVRMA MLRIACDDGS EGFSFGPPEL IRPHIIESFV KKVLIGQNPI NREKIWQELA HWQRGSASQF TDRALALVEQ ALWDLAGRAL KLPVHKLLGG YRDKVLAYGS TMCGDDLPGG LSTPDEYGQF AEKLVQRGYK GIKLHTWMPP ISFAPNPRMD VQACAAVREA VGPDIALMLD GYHWYSRTDA LFIGRQLQKL DFAWFEEPMM EDSAESYAWL AANLDIPVLG PESIAGKYHS RASWVTNKAC DILRAGVAGV GGIGPCLKVA HLAESFGMDC EVHGNGAANL AVVGAISNCR WYERGLLHPF LDYDDVPAYL NTLVDPMDSD GFVHLCEKPG LGEDINFSYI ETHTEQRY
|
| |