Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3207 |
Symbol | |
ID | 1184864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3600713 |
End bp | 3601621 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637394560 |
Product | transcriptional regulator, LysR family |
Protein accession | NP_792994 |
Protein GI | 28870375 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0118279 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGTTGA TTTCGTTAGA TAGGCCTGCT TCATGTGGAT TTAACGATAG ACATAGCCCT AAAACTTCTT TCGACTGGGA GGACTTGCGT TATTTTCTGA CGTTCGCCGC GGTTAAATCG CTGAGCGGCG CGGCGAAAAA GTCAGGGGTC GAACACGCCA CTGTCTCGCG CCGCATCGCT TCTCTGGAAA AATCCCTGAA CGTCAAACTC GTCGACCGCC GCAAGCGCCT CTACGAATTG ACCGATGATG GCCGGAAACT GGCCGTCATT GGCCGACGCA TTGAAGAGCA GGCCGAAGCC ATTGGCAGGC TCGCCGTGGC GGCTCAGGAC GCGCCTGCGA CCGAGGTCAC GATCAGCGCG CCCTCATCGG TTGCTATCGA AAAGCTGGTG CCGCAGTTGG GGGCGTTTCG GGCGATGCAC CCTGGCATTG TGTTGCGGCT GTTGGGTGAT CATCAGTATT CGTCGTTATC CAGTTGCCAG TCAGACCTGT GCATTCGTTT TTCCAGACCT GTCGAAAACG GCATTGTTGC GCGGCGTATC GGGACGGCGT CTTTTTCATT TTACTGTTCG AATTTTTATC TTGAGCAACG GCTCGCTGAG CATTATGAGT TCATTGGCTA CGACAGTGAG GTGATGACTG CCAGCCAGAA TGTGCTGCTC AGGACTATTG TCGGCGCGCG TCCGTTTGTG CTGGAAGCCA AGACAGTGGA GTTGCAGATC CGTGCCGCAG AGGCCGGTGT GGGCATTGCG TTGCTGCCCG ATTTTGCTGT CGAACAAAAC CCGCGCCTTT GCCGGCTTGA ACTGTCCAGG CCGCTGGAGG TTGATGTGTG GCTGGGTGTT CATGAAGACC TGCGTTCAGT CGCGTCTATT CAGGCGGCGA TGAATTACGT GGAAAGCTGC TACCGCTGA
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Protein sequence | MALISLDRPA SCGFNDRHSP KTSFDWEDLR YFLTFAAVKS LSGAAKKSGV EHATVSRRIA SLEKSLNVKL VDRRKRLYEL TDDGRKLAVI GRRIEEQAEA IGRLAVAAQD APATEVTISA PSSVAIEKLV PQLGAFRAMH PGIVLRLLGD HQYSSLSSCQ SDLCIRFSRP VENGIVARRI GTASFSFYCS NFYLEQRLAE HYEFIGYDSE VMTASQNVLL RTIVGARPFV LEAKTVELQI RAAEAGVGIA LLPDFAVEQN PRLCRLELSR PLEVDVWLGV HEDLRSVASI QAAMNYVESC YR
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