Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3186 |
Symbol | |
ID | 1184843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3576922 |
End bp | 3578451 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394540 |
Product | sodium:solute symporter family protein |
Protein accession | NP_792974 |
Protein GI | 28870355 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0591] Na+/proline symporter |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAGCA CAACAACGGT TTCGGATCTG TACATCACGT TTGGTCTGAT CGGCGTGTTT CTGGCCGGTA TGATTGCCGT GCTTTATGCA ACCAACCGCA AGAGCGACAG CTTTTCCGAT TACGCCGTTG GCGGGCGTTC CTACGGTCCG TGGTTCATCG CCATGTGTTA CACCAACTCC TGGTGGCCGG GCGCGACCTT TACTGCATTC TTTGCGTTGT CCGTGGGTGG CGCGCTGGGC TTTTACGGCA TGGTCTACGC CACGCTCGGG GTGACGGCGA TGTACCTGAT GGCCAATCGC GCCTGGACCT GGGGCAAACG CTTCAACCTG ACTACTCAGC CTGATTTACT GGGCATGCGC TTCAACAGCC CGGTGGTCAA ACGTATCGCT TCGATCATCG GCATCATCTC GGTATTCCCG TGGGTGGTGA TGGGCATTCA GGCCCTTGCG ACCTTGTTCC AGTTCGCCAG TTTCGGTCGT TGGGGGGTGA CCACCTGCCT GCTGGTCGGG GTTGCCGTGA TCCTGATTCG TCAATACTGG ACGGTCAGCA TGGGCATGCG CGGCCTGATC ATGACCGACA TGTACCAAGG GCTTATTGCC TATGTGTTGT GTGCCGCGCT GTGTATCTTC TTGATGTTCG GTGCTCAGGC GTCGTTCTCG AACCTGTCGC AGCTGCCCGC CAGCATGCTG GTGATTCCTG GCGGTACAGG CAGCACCTAC GGGCCGATGT ACATGTTCAG CCTGATCTTT ACCGGCGTGA TCGGCTCGAT GTGCTGGCCC ATGAGCTTCC AGCGTATCTA CACCGCCAGC GGTGTGCGCT CGGTCAAGAA GGGCACACTG CTGACCATCC TGCTGGTGGG TGGTTTCTAC GGCATTCTGA TGCTGTTCGC TGCGGCCATC AGTCAGGACC CGAACGTAGC GGCCCATCCG CAGCATGGCT GGTTCCTGTC GCTGTTCGAC ATCGGCGGGC CGTGGTTGCT GGCCGTGGCA ATCATGATCG TTCTGGCCGC CAGCATCGGT CATGTCGACG GTTGCGTGCA GGTGTGCGGT ACACAGTTCG CCAACGATCT GGCGACCTGG AACACACCGC GCAGTGATCG CGAAAAAACC ATACTCGCCA AAGCCGGCAT GGTCGTGTTC ATTGCCGCGG CGTCGCTGCT GGCGTACCTG ACCTTCGACT ACGCACGCCT GCAATTGCTG GCGCAGATTT CCTATCAGGG CATCATTCAG CTGGCTGTGC CGCTGTTCTT CGGGGTTTTC AGCCGTCGCG GCAACAAGCA GGGCGCGATT GTCGGCATGC TGGTGGGTAT AGTGATCGCC ATCGTACTGA CCACGATCTA CCCGGATGAC ATTCCCGGGC TGGGTTCGTT GACCAGCGGC ATTGTCGGGC TGATCTTCAA TGCGGGCATT TTTGTCGCCT GCGCCGTGGC CATCAAGCCG AGCGCCGAGG AAGTGCGACG AGTCGATGAG CTGTTCGCCA TGGCTGCGCC GCAGCGTCAC CCTGCAGGCG TGGCGCCGGT CATGAGCTGA
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Protein sequence | MISTTTVSDL YITFGLIGVF LAGMIAVLYA TNRKSDSFSD YAVGGRSYGP WFIAMCYTNS WWPGATFTAF FALSVGGALG FYGMVYATLG VTAMYLMANR AWTWGKRFNL TTQPDLLGMR FNSPVVKRIA SIIGIISVFP WVVMGIQALA TLFQFASFGR WGVTTCLLVG VAVILIRQYW TVSMGMRGLI MTDMYQGLIA YVLCAALCIF LMFGAQASFS NLSQLPASML VIPGGTGSTY GPMYMFSLIF TGVIGSMCWP MSFQRIYTAS GVRSVKKGTL LTILLVGGFY GILMLFAAAI SQDPNVAAHP QHGWFLSLFD IGGPWLLAVA IMIVLAASIG HVDGCVQVCG TQFANDLATW NTPRSDREKT ILAKAGMVVF IAAASLLAYL TFDYARLQLL AQISYQGIIQ LAVPLFFGVF SRRGNKQGAI VGMLVGIVIA IVLTTIYPDD IPGLGSLTSG IVGLIFNAGI FVACAVAIKP SAEEVRRVDE LFAMAAPQRH PAGVAPVMS
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