| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2946 |
|---|
| Symbol | |
|---|
| ID | 1184600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3309146 |
|---|
| End bp | 3310468 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637394307 |
|---|
| Product | outer membrane porin, OprD family |
|---|
| Protein accession | NP_792744 |
|---|
| Protein GI | 28870125 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.153867 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTGT CAGCTTCCTT CGCCCGTAAA AAAGTTCTTA CAAATAATGC GCTTGGAAAA
AACTACAGCC TCGCCCTTGG TCTGCTGGGC ATCAGCGTGC TGCCGGACGC TGCGCAGGCT
CAGGGTTTTG TGGATGACAG TCACGGCACC CTGACGCTGC GCAATTACTA CATGGATCGT
GATTACAAGG ACGACGGCGC CAGGACTGCG ATTCGGGAGT GGGCGCAGGG CTTCATCATG
AACGCGGAGT CGGGTTTTAC CGAAGGGCCG GTGGGCTTGG GCATTGATGC ACGGGCACTG
GTCGGCATGA AGCTGGATTC CTCGCCGGAT CGCAGCGGCA CCGAGCTGTT GCCTGTTTCA
GCCGGCGACG GGCGCGCTGC CGACGAATAT TCACGGCTGG CATTGACCGG CAAACTGAAA
TTTCGTGAAA CAACGGTCAA GACCGGCGAT GTGTCGATCT TTCTGCCATT TGCCTTCGCC
AGCCCCTCGC GTCTGCTGCC GCAGACCTTT CGGGGTACCA CGCTGACCTC GAAAGAGATC
GACGGATTGA CCCTCAATGC CGGCTACATC GACCGGGTCA ACAAGCGTGA CTCAACCAAT
TATCAGGCGA TCAGCATCGC GTCGCCGAAC CGGCGTTTCA ACGCAGCGGC CACCTCATCG
CACATGACCT ACGCCGGGGG CGACTATCAG GTCAGTAAAG CCCTGAGCGT GCGCGTCTAT
CACGCTGAAG TGGCTGACCT CTACACCCAG AACACCCTGG CGCTGCTGCA TAAGCTGGAC
GTGGGCGACG GTGTAATGAC CACTGATCTG CGCAGTTTCT TCAGCCGTGA CACCGGCAGC
GCAAAAGCCG GTGAGGTGGA CAATCAGAAC CTGTCGGCGT TGCTGGGCTA CAAATGGGGA
GGGCACAGCG TGAGCCTTGG TTACATGCAT GCCAGCGGCG CTACGGCGAC ACCTTATGTG
TCGGGCACCG AGTTGATGGG CTTGAGCGAG ATGACCATGA GCTCCGACTT TCTCAATGCC
AGGGAGCGTA CCTGGCAAGC CATCTACGAC TACGATTTTA CGGCGGTTGG CGTTGTCGGC
TTGCGCAGCC GCCTGCGATA CATACGCGGC GACAATATCG AACTGTCGGC CTTCAACGCA
GATGATCGCA AGGAGCGGGA GTTTCAGATG GAGTTGGGCT ATGTGGTGCA GAGCGGTCCA
TTGAAAAATG TCGGCCTGTT GGCGCGCAAG TCGATTTACC GAAATGACTT CCCGACAGGT
GCAGCGTTTC GCGATGAAAA CCAGACGCGC TTCATTGTGC AGTACAGCGT GCCCATCTGG
TAA
|
|---|
| Protein sequence | MAVSASFARK KVLTNNALGK NYSLALGLLG ISVLPDAAQA QGFVDDSHGT LTLRNYYMDR
DYKDDGARTA IREWAQGFIM NAESGFTEGP VGLGIDARAL VGMKLDSSPD RSGTELLPVS
AGDGRAADEY SRLALTGKLK FRETTVKTGD VSIFLPFAFA SPSRLLPQTF RGTTLTSKEI
DGLTLNAGYI DRVNKRDSTN YQAISIASPN RRFNAAATSS HMTYAGGDYQ VSKALSVRVY
HAEVADLYTQ NTLALLHKLD VGDGVMTTDL RSFFSRDTGS AKAGEVDNQN LSALLGYKWG
GHSVSLGYMH ASGATATPYV SGTELMGLSE MTMSSDFLNA RERTWQAIYD YDFTAVGVVG
LRSRLRYIRG DNIELSAFNA DDRKEREFQM ELGYVVQSGP LKNVGLLARK SIYRNDFPTG
AAFRDENQTR FIVQYSVPIW
|
|---|
| |