| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2927 |
|---|
| Symbol | oprE |
|---|
| ID | 1184581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3290338 |
|---|
| End bp | 3291669 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637394288 |
|---|
| Product | outer membrane porin OprE |
|---|
| Protein accession | NP_792725 |
|---|
| Protein GI | 28870106 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0534215 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGTA TCAATCGCGC CACCCCTTTC GTTGCGGGCT TTTGTGGCCT GCTGATCGCG
CAGCAGAGCT ACGGCGAAGG TTTTCTGGAA GACAGCAAGG CCAGCATTCT GGCGCGCAAC
TTCTTCAGCA ACGCCGACAA CCGTAGCGGT GCTGCTGCCC CTAACTACAC GCAGGAGTGG
GGCCAGGGCT TCATGCTCAA TTACCAGTCC GGCTACACGC CCGGCTCGGT AGGCTTGGGC
GTTGATGCAC TGGGCCAGTT GGGCGTTCGT CTGGACTCGG GTAAAGGACG CCACTACAAC
CCGCAAAGTA CCGCGTTCAA CGGCAACATC TTCCCGACGG ACAGCGACGG CCGCGCGGTT
GATGAGTTCA GCAGCCTGGG CGCGACGCTC AAGGCGCGCG TCTCGCAGAC CGAGTTGAAG
TACGGCACGC TGGTGCCGAT GCTGCCGGTG GTAATGTCCA CCGACCGTAT GCTGCAGCAG
ACCTTTCGTG GCGGTCAGGT TCAGTCCAAA GACCTGAAAG ACTTCACCTT CATCGCAGGC
CAGCTGGAAC ACGTCATGGG CCGGGGTTCG ACCAACCAGA TGGGCATGTC GATCCCCGGC
GCCAACAACC CGTTGACCGG CGAATTCGTC AACAAGTTCT ACTACGCAGG CGTCGATTAC
AAACCCGTCA AGGACCTAAC CCTGCAGTAT TACTACGGCA ACCTGGAAAA CTTCTACAAA
CAGAACTTTC TCGGTCTGAA ATACGACCTG CAACTTGGCC CTGGTACTTT GCGCACCGAC
CTGCGCCACT TCGACAACCG CTCGGACGGC GCGAATGGCC ACGATCCTTC GTTTTACACG
GTGGGTTATT ACGGCAACGG CGTCACCAAG GGTGAAGTCG ACAGCCGTCT GTCCAGCGCT
CAGTTCACTT ACCTCATCGA CGGCCATACC TTTGCTGCGG GTTATCAGGC AGTCACCGGC
GACAGCGACG CGGTCTGGCT GAATCAGGGC GATGGATCAA CCGCTTACTT CATGACCGAA
TCTATGATCG GCAAATTCCA GCGCGCCGGG GAACGCACCT GGCAAGTCCG TTATGGCTAT
GACTTCGCCA GACTCGGCGT ACCCGGCCTG AACTTCTTGG CCATGTACGA AAGCGGCTCG
AACATCCAGA CCTCCGACGG CGACAAGAAG GAATGGGAAC GCAACGTGAC CCTGAGCTAC
GTTTTGCAAT CGGGCCCGGC GAAAAACCTC AGCATCGCAC TGCGTCACGC ACAACTTCGC
ACCGAGTTCG CCAGCCAGCG TGATGCCGAT GAGCACCGGA TCATTGTCAG CTATCCGATC
AATATTTTTT GA
|
|---|
| Protein sequence | MERINRATPF VAGFCGLLIA QQSYGEGFLE DSKASILARN FFSNADNRSG AAAPNYTQEW
GQGFMLNYQS GYTPGSVGLG VDALGQLGVR LDSGKGRHYN PQSTAFNGNI FPTDSDGRAV
DEFSSLGATL KARVSQTELK YGTLVPMLPV VMSTDRMLQQ TFRGGQVQSK DLKDFTFIAG
QLEHVMGRGS TNQMGMSIPG ANNPLTGEFV NKFYYAGVDY KPVKDLTLQY YYGNLENFYK
QNFLGLKYDL QLGPGTLRTD LRHFDNRSDG ANGHDPSFYT VGYYGNGVTK GEVDSRLSSA
QFTYLIDGHT FAAGYQAVTG DSDAVWLNQG DGSTAYFMTE SMIGKFQRAG ERTWQVRYGY
DFARLGVPGL NFLAMYESGS NIQTSDGDKK EWERNVTLSY VLQSGPAKNL SIALRHAQLR
TEFASQRDAD EHRIIVSYPI NIF
|
|---|
| |