Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2776 |
Symbol | |
ID | 1184430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3095325 |
End bp | 3095987 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637394144 |
Product | amino acid ABC transporter, permease protein |
Protein accession | NP_792581 |
Protein GI | 28869962 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.636718 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTATC AACTGAATTT TGATGCTGTA TGGCGCGACT TTTCCAACTT GCTGGCCGGG TTGGGGCTCG GTCTGGAACT GGCGCTGATC TCGATCGCCA TCGGTTGTGT GATCGGCTTG ATGAACGCCT TCGCATTGTT GTCGCGTTAC CGGGCGCTGC GAATTGTGGC CTCGATCTAT GTGACGGTGG TGCGCAACAC GCCGATTCTG GTGTTGATCC TGCTGATCTA CTTCGCTTTG CCCGGCCTGG GCATTCGCCT GGACAAACTG GCGTCTTTTG TCGTCACGCT GTCGCTCTAT GCGGGCGCGT ATCTGACCGA AGTGTTCCGC GCCGGGTTGT TGAGCATCCA CAAGGGGCAG CGTGAAGCAG GGCTGGCCAT CGGTCTGGGT GAATGGCAGG TGCGGGCCTA CATTATCGTG CCGGTGATGT TGCGCAACGT GTTGCCAGCG CTCTCCAACA ACTTTATCTC ACTGTTCAAG GACACATCGC TGGCGGCTGC CATTGCCGTG CCGGAGCTGA CCTATTACGC GCGCAAGATC AACGTCGAAA GCTACCGGGT GATCGAAACC TGGCTGGTCA CTACCGCGTT GTATGTGGTG GCCTGCTACG TGATCGCCAT GCTGCTGCGC ACCCTCGAAC AACGTCTGGC GATTCGCCGC TAG
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Protein sequence | MNYQLNFDAV WRDFSNLLAG LGLGLELALI SIAIGCVIGL MNAFALLSRY RALRIVASIY VTVVRNTPIL VLILLIYFAL PGLGIRLDKL ASFVVTLSLY AGAYLTEVFR AGLLSIHKGQ REAGLAIGLG EWQVRAYIIV PVMLRNVLPA LSNNFISLFK DTSLAAAIAV PELTYYARKI NVESYRVIET WLVTTALYVV ACYVIAMLLR TLEQRLAIRR
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