| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2763 |
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| Symbol | |
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| ID | 1184417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3081957 |
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| End bp | 3084740 |
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| Gene Length | 2784 bp |
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| Protein Length | 927 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637394131 |
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| Product | autotransporter, putative |
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| Protein accession | NP_792568 |
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| Protein GI | 28869949 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0118216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACGTC ACCTGCGCGG CAGTCTGGCG CTTTACCCCC TTTTCAACGG CCTCTCTGTC
CGCCTGACCG GGAGAGCCGT CATCAGAATT CGCCGCCATT CTCTGAGTCA TACTCGCAAG
GCCCTGCCAG TGTTCATTCT GGCAATCTTC CCGCACCCGG CCGAAGGCGC CTGCAACCTG
GCGCCCACGC CCGGCAACGC CGTTCAAGTC TGCGACAGTG GCAACAACGG CCCGTTTACC
GACGTGAGCA CGACCCGTCA CACGCTGGTA TTTCCAGCGG GCGGCACGGG CACCGTCATT
GGCACCATTA CCTACGGGGC GGAAGCGGAC AGCATCGACA TGGGTTCGGG CCGGATACTG
GGCAACGTCA ATCAGGGGGC GGGCAGCGAT ACATTCATCC TTTCAAGCGG TGAGATCACC
GGCGAGATCA GCCAGGGCGC TAACCCCGAT GATTTTGTCA TGCGTGGCGG CACGCTCGGT
TCGCTTGCTC AGGGTGACGG GCTGGACACC TTTCTGATGA CCGGAGGTAC AATCCTCCGC
GCCTTCGAGG ACGGCGACCG GGCAGTTATG ACCGGCGGCA GCATCGGCCG GGTTGACATG
AAACTGGACA ATAACGTCTT CGAGCTTTCT GGCGGCAGCA TTATCAACAA TCTGGTCGCC
GGGTTTGGCC GGGACACGAT TACAGTGTCG GGCGGCAGCA TTGGTGGCGC CATCAGCGTC
AGTGGCGGTG ACGACCGGAT AACCGTCAGT GGCGGCGAAG TTCGTGGAGA AATACGCGCA
AGCTTCGGTA ACGACAGCTT TGAGTGGCTC AACGGCGGCT ACGTACGCAG TAGCGTGTTG
ATGGCCGATG GCAACGACAT CGCGCAGTTG TACAACCTCA GCGAGTACCT GACGAGCAGC
AACCCCCTGC TCGATGGCGG CCCTGGCGAT GACGTACTGA CGTTCGGCAA CAGCGTGGTG
TCTCGGCCAG AGCACTACAC CCAGTGGGAA ACCGTCAACC TGTTCAATGC ATCGCAGTTG
AACATGGCCG GGGCGTTGAC CCTCGGCGAC AGCGTCAGCA CTACCGGCAT CCTGAATATC
GACGCCAGTA GCACCCTGCG TTCAACCTCC GGCAGCGTTG TCGCGTTCAA CACCTCGTCG
CGTGCGACCC TCGACAACGC CGGGACGCTG GACCTGACCG GCAATGGTAG TTCGGTGACC
GATACCCTTA CCGTCAACGG CAACTACTAC GGCCGGGCAG GACGACTGCT GCTGCAATCG
ACACTGGGAG ACGAAACCTC GCCCAGCGAT AAACTGGTAG TGTCACAGGG CACCATCGGC
GGCACGACCA GCATGCGGGT CAGCAATGTC GATGGTCTGG GGGCGCTTAC TCAGGGCAAC
GGCATCGAGG TGGTACAGGC CACCCAAGGC GCTACCAGCG AGGTGACTGC ATTTTCGTTG
CAGAACTCGT TGTCCGCAGG CGCCTATGAC TATTACCTGT TCAAGGGTGG CGCTACGGCT
GGCAGCGAAA ACAGCTGGTT TCTGCGCTCG ACGGTGATTG CACCACCATT GCCCGAAACG
CCGCCCCCAA GTGAACCTGT TCCTGTTCCT GTTCCTGTTC CTGTTCCTGT GCCTGAGCCC
ATACCAACAC CGCTGCCGGA ACCTGCGCCC GAACCGGCAC CATCGCCCTC GACTCCACCG
GAGCCAACCG AACCCACCGT GCCCCCGGCC CAACCTCCTC CAACTGACCC CATACCTTCG
CCTGCACAAC TTCCGGCAAC CACTCTTCCC GTAGCGGCAA TCGGCACACC ATCGCTGCCG
GAGCCGATTC GCGGCGCGGC CCCTGTGCCG CTGTACCGAC CGGAAGTTGC CAATTACGCG
ATTGTACCGC CCGCCGCCGC GACGCTGGCG CTGACCTCGC TGGGTACCTT CCATGAGCGT
CAGGGCGATC AGAGCCTGCT GGCACAATCC GGGGCAGCGC CGGCTGGCTG GGCGCGAGTG
TTCGGCAGTG ACTTCAAACA ACAATGGTCA GGCACGGTGA GCCCCGGCCT GGACGCATCG
CTCAAGGGCT ATCAGATTGG CCATGACGTG TATGCCTGGT CACTTGATGG ACAGCAGATC
CTGCGCATAG GGCTGTTCGT CGCCCAAAAC CGTCTGGACG GCAAGGTGCA GGGCTTTGCT
GGCGGATTCC ATGCGCGGCA CACCGGGCGG ATCAAACTGC ATGGCGACAG CGTCGGGGCC
TACTGGACGC TCTCCTCGCC CACCGCAAGC TACGTCGATG CGCTGGTGAT GAGCACGCGC
CTGGATGGCT ATAGCCGCTC CGACCGGGGC CTGCGCATCG ACACGCAAGG CCATGCGCTA
AGCCTTTCTG TGGAAGCCGG TCACCCGTTT GTGCTAACGC CGCGATGGGT CGCCGAACCG
CAGGTACAAA TCATTCATCA GCGCATTGAC CTTGACGATC AGCACGACGG TATTTCACAC
GTGGGTTTTG ACAGCCAGCC CTACAACACC GGGCGACTGG GCATACGATT CAAGGGCCGC
TACGCATTGG CAGGCATGCC CATCGAGCCC TACCTCCGGG CTAACCTATG GCGCAATGCA
GGCGGGCATG ACACGGTGAC ATTCGATCAC ACAGAACGCA TCAAGACAGC CCATCGATCA
ACGACGGGCA GCCTGGGCGC AGGGATGGTT ATCAAAGTCG CCAGCGACAC CAGCGTGTAC
TGGGGCGCTG ACTACAACCG TGATCTGAAT AGCCACGATT CAAGCGGAGC AAATGCCAGC
CTGGGCGTCA GGCTGGCGTG GTGA
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| Protein sequence | MRRHLRGSLA LYPLFNGLSV RLTGRAVIRI RRHSLSHTRK ALPVFILAIF PHPAEGACNL
APTPGNAVQV CDSGNNGPFT DVSTTRHTLV FPAGGTGTVI GTITYGAEAD SIDMGSGRIL
GNVNQGAGSD TFILSSGEIT GEISQGANPD DFVMRGGTLG SLAQGDGLDT FLMTGGTILR
AFEDGDRAVM TGGSIGRVDM KLDNNVFELS GGSIINNLVA GFGRDTITVS GGSIGGAISV
SGGDDRITVS GGEVRGEIRA SFGNDSFEWL NGGYVRSSVL MADGNDIAQL YNLSEYLTSS
NPLLDGGPGD DVLTFGNSVV SRPEHYTQWE TVNLFNASQL NMAGALTLGD SVSTTGILNI
DASSTLRSTS GSVVAFNTSS RATLDNAGTL DLTGNGSSVT DTLTVNGNYY GRAGRLLLQS
TLGDETSPSD KLVVSQGTIG GTTSMRVSNV DGLGALTQGN GIEVVQATQG ATSEVTAFSL
QNSLSAGAYD YYLFKGGATA GSENSWFLRS TVIAPPLPET PPPSEPVPVP VPVPVPVPEP
IPTPLPEPAP EPAPSPSTPP EPTEPTVPPA QPPPTDPIPS PAQLPATTLP VAAIGTPSLP
EPIRGAAPVP LYRPEVANYA IVPPAAATLA LTSLGTFHER QGDQSLLAQS GAAPAGWARV
FGSDFKQQWS GTVSPGLDAS LKGYQIGHDV YAWSLDGQQI LRIGLFVAQN RLDGKVQGFA
GGFHARHTGR IKLHGDSVGA YWTLSSPTAS YVDALVMSTR LDGYSRSDRG LRIDTQGHAL
SLSVEAGHPF VLTPRWVAEP QVQIIHQRID LDDQHDGISH VGFDSQPYNT GRLGIRFKGR
YALAGMPIEP YLRANLWRNA GGHDTVTFDH TERIKTAHRS TTGSLGAGMV IKVASDTSVY
WGADYNRDLN SHDSSGANAS LGVRLAW
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