| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2652 |
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| Symbol | |
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| ID | 1184304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2943711 |
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| End bp | 2946692 |
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| Gene Length | 2982 bp |
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| Protein Length | 993 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637394021 |
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| Product | bacteriophytochrome, putative |
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| Protein accession | NP_792460 |
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| Protein GI | 28869841 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3920] Signal transduction histidine kinase
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.163581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGAGC ACACACTGGA CGCGAATCCC GATGCAGCGC TTGAAGCAGC GCTTGCTGAA
TGTGCACGTG AGCCGATCCG GATCCCTGGC GCGATTCAGC CTCATGGCGT CTTGCTCAGC
GTCGCAGGTG ATCCGCTTTG CATTGAACAG GTCAGCGCCA ATTGCGCGAA GAGTCTTGGC
CTGGAAAGCG CCGAGCTGCT GGGCCAACCC CTGTCGATCC TGCTGTCAGC GGCACATTCA
ATGCTCATCA ATCAGGCGTA CAGCCAGCCT GCGATGCCCA ACAGCGATCC GATACGACTG
ACGGTGAGGG CCGTGGATTA CAATGCGTCG CTGAGCCGTG CCGGGGATGT ACTGATCATC
GAGCTGGAGC CCTTTGTCGA AGCCGCTCAC GAACAGTCCA GAATCATCAC CCGTGTGTTG
CGCAATCTGC AGGCCGCCAC AACCCTGGAG ACGCTGTTCG ATATCGGCGT GCACGAGATT
CAGGCGCTCA CCGGTTACGA CCGGGTCATG ATTTACCGGT TCGAGCCCGA GGGTCATGGC
AAGGTCGTTG CCCAGGCACT TACCGGCCCC CTGCCCAGCT ACAGCGGCCT GAACTTCCCG
GGCTCCGACA TTCCCGCCCA GGCGCGAGAA CTGTATCGCC TGAACTGGAT TCGGCTCATT
CCCGATGCCA CCTACGTTCC TGTGGCCTTG ATACCGACGT TGCGACCCGC GACCGGGCAA
CCGCTGGACT TGAGCCTCTC GACACTGCGC AGCGTGTCTC CTGTTCACTG CGAGTACCTG
AAAAACATGG GCGTGCGCTC ATCCATGAGT ATCTCGCTAC TGGACGGCGG CGAGCTGTGG
GGGCTGATTA CCTGCAGCCA TCCCGAGCCG CTGCTGGTGT CCAGAGAACT GCGCGATGCC
TGCGCTATGA TCGGCCAACT GTTGTCAGTA AAGATTTCCG CAATCGTCGC CACTCATATT
CAGCGCGAGC GCGAAGAAAA AGTCGTCCTG CTCGGGCAAC TGGCGGATGC CATGAACCGC
GCCGACCATG AAATTCTCCA CGGTCTGGTA AGCCGTCCAC AGCTGCTTCA GGCCCTGACG
CAGGCCGATG GCGCGGCCGT GCTGATTGAC GACCAGGTTC ATCTGTTCGG TCAATGCCCC
ACATCCGAGG AGGTTCGAGC CCTTTACCAG TGGATTCGTG ACACCGGCCT CACCCGCCAA
CGGTCCAAAG AGCGTGCCAC GGGCCTGCAA GGGCTGGGCG TGTTTCACAC TGACTCAATG
CAAAGAGAAC GTCCCGAGAG CGCCGCCTAC CGCGAGACTG CCAGCGGGGT CATTGCCTTC
ACGCTGCCCA AGCCGGTCGA CAATGCCGTC ATGTGGTTTC GCTCCCAGCT TGCCTCCACC
ATGAACTGGA GCGGCAACCC GGCACATCAT GTCAGCACCC GCGCGGCAGG CTCGGCAAGC
CATGGCCTGC GTCCACGGCA ATCGTTCGAT GTCTGGAAGC AGGAAGTCAC CGGCATCGCC
CGCCCTTGGT CGCGGGCAGA TCTTTATGGC GCCGAAGACA TTCGCCGTTC AGCCCTGGAA
AGTGACCTGG AACGCCAGGT GCAGCGCGAG CAGGAAGCGG TTCGCTTGCG TGACGAACTG
GTTGCGGTGG TTTCCCACGA CCTGCGCAAC CCGATGTCTA TCATCATCAT GCAATGCGGC
ATGATGCAAC GCTGGGCGGT CGACGACACG AACTTTGAAA ACCGCAACAT CCGTCGCGCC
CTGGGCACCA TCGAGAAAGC CACAACGCGC ATGAACAGCC TGCTCGAGGA TCTGCTCGAC
ACCGCGCAGA TCGAGGCTGG CCGTTATCAG TTGTCGCGCC TTGCATTGAG TGTCACCAGC
CTGCTTGAAG AAGCCTGCAG CCTGCTGGTC ATGCTGACGA CCGAGAAGAA TATCGAGCTC
AATTGCACCT CTGCGCAGGG CCTGGTGATC GACGCGGACC CGGAACGGAT CTTTCAGGTG
CTGTCCAATC TGGTTGGCAA TGCCATCAAG TTCACCCCCA AAGGCGGTCG AATCAATATC
GACGCAGTGG CCGATGGTGA CGACGTGCTG TTCAGGGTCA GTGATGACGG GATCGGCATT
CCGGCGCAAC ACCTGCCCTA TATTTTTCAG CGGTATTGGT CAGTGAAAGA AGGCAACCCG
CGTGGCAACG GCCTGGGGCT GTACATCTGC CAGGGCATTA TCACCGCTCA CGGCGGGCGT
TTATGGGCCG ATAGCTCGCT TGATTCAGGC AGTGTGTTTT CCTTCACGCT GCCCATGCAC
CAAGGGCAGG ACACGATTGG CGAGTCGACC TTCCTGAAAC AGAGCGGCAC CACACACCGC
CTGGCGCAAT CGATTTCCAG CAAGCTGGAG CGTCAGCAAC TGGAAGATCG CCTGACCCGC
GCGGGGTTGT TGAACGAGTT GAATCACCGG GTCAAAAATA CGCTGGCAAC CGTTCAGGCT
ATCGCTTCTC TTACGGTAAA CAGCTCGACC TCACTCGATT CCTTTCGCAA AAGCTTCGAT
GCACGCCTGT TTGCACTGAG TCAGGCGCGC GCAGAGTGGA TGTCCACCGA GCTGGCCGAT
CTGCTGGCAC AGCTGCAAGA CGTGAACGGC GGGCAGCACC GGATTACCTT CACAGGAGAC
CCGGTCAGAC TCGAACCGCG GATTTCCCTG ACGCTTTCAA TGGTGCTTCA CAAACTGATG
GCCAATGCAT TGCAACATGG CGCGCTTTCC TCGCCTGCAG GTCAGGTGAC GGTGGCGTCC
ACCTTGAACA GTCATCACAA CCCGCCCACG TTGAGTATCG ACTGGCTGGA AACAGAAGGC
CCGCCGGTCG TTGCGAGCAA CGTAAAAGGC TTTGGCCTGC GTTTGATACG CCGCAGTATC
GAGCGCGAAC TCAAAGGCAA GGTCGACATC AAGTTCGCCA GTACAGGTGT CAGTTGGTCA
ATGCTGATCC CGTGGCCAGA AAAGCCGGAA AGCAGTCTAT GA
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| Protein sequence | MIEHTLDANP DAALEAALAE CAREPIRIPG AIQPHGVLLS VAGDPLCIEQ VSANCAKSLG
LESAELLGQP LSILLSAAHS MLINQAYSQP AMPNSDPIRL TVRAVDYNAS LSRAGDVLII
ELEPFVEAAH EQSRIITRVL RNLQAATTLE TLFDIGVHEI QALTGYDRVM IYRFEPEGHG
KVVAQALTGP LPSYSGLNFP GSDIPAQARE LYRLNWIRLI PDATYVPVAL IPTLRPATGQ
PLDLSLSTLR SVSPVHCEYL KNMGVRSSMS ISLLDGGELW GLITCSHPEP LLVSRELRDA
CAMIGQLLSV KISAIVATHI QREREEKVVL LGQLADAMNR ADHEILHGLV SRPQLLQALT
QADGAAVLID DQVHLFGQCP TSEEVRALYQ WIRDTGLTRQ RSKERATGLQ GLGVFHTDSM
QRERPESAAY RETASGVIAF TLPKPVDNAV MWFRSQLAST MNWSGNPAHH VSTRAAGSAS
HGLRPRQSFD VWKQEVTGIA RPWSRADLYG AEDIRRSALE SDLERQVQRE QEAVRLRDEL
VAVVSHDLRN PMSIIIMQCG MMQRWAVDDT NFENRNIRRA LGTIEKATTR MNSLLEDLLD
TAQIEAGRYQ LSRLALSVTS LLEEACSLLV MLTTEKNIEL NCTSAQGLVI DADPERIFQV
LSNLVGNAIK FTPKGGRINI DAVADGDDVL FRVSDDGIGI PAQHLPYIFQ RYWSVKEGNP
RGNGLGLYIC QGIITAHGGR LWADSSLDSG SVFSFTLPMH QGQDTIGEST FLKQSGTTHR
LAQSISSKLE RQQLEDRLTR AGLLNELNHR VKNTLATVQA IASLTVNSST SLDSFRKSFD
ARLFALSQAR AEWMSTELAD LLAQLQDVNG GQHRITFTGD PVRLEPRISL TLSMVLHKLM
ANALQHGALS SPAGQVTVAS TLNSHHNPPT LSIDWLETEG PPVVASNVKG FGLRLIRRSI
ERELKGKVDI KFASTGVSWS MLIPWPEKPE SSL
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