| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2313 |
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| Symbol | |
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| ID | 1183964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2561986 |
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| End bp | 2562957 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637393692 |
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| Product | sensory box/GGDEF domain protein |
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| Protein accession | NP_792132 |
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| Protein GI | 28869513 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.447231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCGCGATG ACCAAGGGCT GTGGACCGGG TATCTGGCCG TGTGCATCGA CGTCACCGAG
CACAAGCGTG TCAACGAAGC CCTTGCCGCG AAGGGGCAGT TGTTGAAGAA GCTGGGTTCG
CAGGTGCCCG GCGGTATTTA TCAGTACCAC CTGGCTGTGG ACGGCAGTGC GCGTTTCAGG
TACGCCAGCG CGGGCATGTG CGAACTCTTC GAGGTGCAAG AAGCGCAGTT GCTGGGCGAC
TCCGAGGCGG TGCTGCGGCG TATTCAGCCG GCGGATCTGA TACGGGTCAG AAGCTCGATT
CTTGCCAGCG CCAGGCACCT GACGCCCTGG AGCGAAGAGT ACCGTGTCGA CCTGCCACGC
AAGGGCGCGC GTTGGCTGAG CGCGGCTTCC ACGCCGGAGC AACTGGCGGA CGGCAGTGTG
CTGTGGCACG GTTTTGTGTC CGATATCACT GACCTCAAGC GCGTCGAAGA GGAACTGCGA
GCGCTGTCGG TGACTGACGT GCTGACCGGC GCCTATAACC GGCGCTATTT CCAGGACCGC
ATGCAGGCCG AACTGAAAAG AATCGATCGG CACGGGGGCA ACCTGTCGAT CATCATGCTC
GACATCGACC ACTTCAAACG CATCAATGAT CGCTTCGGGC ATGCCGCAGG CGATCAGGTG
CTCAAGGCTA TTTCGGAAAA GATCAGTCAG CGCCTGCGCA GCGACGATGT GTTCTGTCGT
CTGGGTGGCG AAGAGTTCAT GGTGGTGTGC CCAGGCACCC GAGGCGGGCA GGCTTATCAA
TTGGCCTTGA GCTTGCGCGA AGGGCTGCGC AATCAGGTGA TCGAAGGCGT TGATCAGGTG
GTGACGGCCA GCTTCGGGAT TGCCAGCTGG CGCGCAGGCG AGGGGATCGA CACGATGCTG
CTGCGCGCCG ATTCGGGCGT GTACGCCGCC AAGCAGGCTG GTCGGGATCG GGTCGAGCCC
GAGCAGCTCT GA
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| Protein sequence | MRDDQGLWTG YLAVCIDVTE HKRVNEALAA KGQLLKKLGS QVPGGIYQYH LAVDGSARFR
YASAGMCELF EVQEAQLLGD SEAVLRRIQP ADLIRVRSSI LASARHLTPW SEEYRVDLPR
KGARWLSAAS TPEQLADGSV LWHGFVSDIT DLKRVEEELR ALSVTDVLTG AYNRRYFQDR
MQAELKRIDR HGGNLSIIML DIDHFKRIND RFGHAAGDQV LKAISEKISQ RLRSDDVFCR
LGGEEFMVVC PGTRGGQAYQ LALSLREGLR NQVIEGVDQV VTASFGIASW RAGEGIDTML
LRADSGVYAA KQAGRDRVEP EQL
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