Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2286 |
Symbol | |
ID | 1183937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2527650 |
End bp | 2528348 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637393665 |
Product | transcriptional regulator, GntR family |
Protein accession | NP_792105 |
Protein GI | 28869486 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.28962 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCTGACAA CGGAAGACGA CCCGGAAACC CTTTCCGAGA ACGTTTTCCG ACGCATTCAG TCGGCCATTG TCAAAGGCGA AATCGCCCCC GGCAGCAAGA TTTCCGAGCC GGAGCTGGCG CGCACCTATG GCATCAGTCG CGGCCCGTTG CGTGAAGCGA TCCATCGGCT TGAAGGCCAG CGGCTGGTGG TGCGTGTGCC GCATGTGGGC GCCCGTGTGG TCGCGCTCAG CCACGCCGAA TTGATCGAGC TGTATGAAAT TCGTGAATCC CTGGAAGGCA TGGCCTGCCG CTTGGCCGCC GAACGCATGA GCCAGGCCGA GATTGATGAG TTGCGCAGCG TGCTCGACAC CCATGAACGC GATGCGGCGT TCCAGGCGGG CATCGGTTAC TACCAGCAGG AAGGTGATTT CGACTTTCAT TACCGGATCA TCCAGGGCAG CGGCAACCGC ACCCTCAGTC AGATGCTCTG CGGTGAGCTT TATCAACTGG TGCGCATGTA CCGCATCCAG TTCTCCACCA CGCCCAACCG GCCCCGGCAG GCCTTTGCCG AACACCACCG GATTCTCGAC GCCATCGCCG AGCGCGACGG CGAGCTGGCC GAATTGTTGA TGCGCCGTCA CATCGGCGCG TCCAGACGCA ACATCGAGCG CCATTATCAG GCGGCTTCCC AGGCAACTTC CGACCGAGGT CAACCATGA
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Protein sequence | MLTTEDDPET LSENVFRRIQ SAIVKGEIAP GSKISEPELA RTYGISRGPL REAIHRLEGQ RLVVRVPHVG ARVVALSHAE LIELYEIRES LEGMACRLAA ERMSQAEIDE LRSVLDTHER DAAFQAGIGY YQQEGDFDFH YRIIQGSGNR TLSQMLCGEL YQLVRMYRIQ FSTTPNRPRQ AFAEHHRILD AIAERDGELA ELLMRRHIGA SRRNIERHYQ AASQATSDRG QP
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