Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1855 |
Symbol | |
ID | 1183500 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2027444 |
End bp | 2029525 |
Gene Length | 2082 bp |
Protein Length | 693 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637393234 |
Product | TonB-dependent receptor, putative |
Protein accession | NP_791679 |
Protein GI | 28869060 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0314757 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGCCC CCTTTACTTT GCGTCACGCA AAGCGTTTGT CCGTGTCCCG TTCCATATGG CCCTTGATGT CGGCCGGTTT ATTCACAATG AGCCCGTTGT GCTCTGCATT GGCCGACACC GTTAAAGTCG AAGATTCGAC GTTGACGCTC GGTACGGTAA CTGTTCAGGG CGCGACCAGT GGCCCTTTGA GCACCAGCAG CGTACTTAGC TCAGTGGATA TCCTGGGGGG CGACATCCTT GAAAAGATGC CAGTCAACTA CAGCTGGGAA CTGTTCAGGC GCGCGCCGGG TGTGATGTTG ACCGAGTTCA ATCAAGGCAC CACATCCGGC AAGATTTCTT TCCGCGGCTT TAACGGCGAA GGGGAGGTGA ACGCCATCAA ATTGCTGATT GACGGCATTC CAAGTAACAG CAACGACGGC AACATGCCGT ACATGGACAT GATCTTTCCG ATGGAGCTGG ACAGCATCGA GGTGGTGCGT GGCACCAGTG ATGCGCGCTA TGGCCTTAAT AACATTGCCG GCAACGTCAA TATGCTGACC CGCACGGGCG GCGACTACAA TAAGGCGCGG TTTCGTTACG GCAGCTTCAA TACCCAGGAA ACTCAGCTAG CCAAAGGCCT TGAGAGCAGC AACTGGACTC AGAATTACTT CTTCGCCTAT CAAAAGTCAG ACGGTTACCG GGATCACGCC GACGCAGACA AGTTTTCAAT GTCAGGCAAA TGGTTTTTTA CGCCGGACGA TGACAGTTAC CGTATAGGCC TGATCGCTCG CCACTATGAA ACCGAGGCGC AGGAGCCGGG GTATCTGACC GAGGACGATG CACGTCATCA CCCCGAAATG ACCAACAGTT TCAACGCGAC GGATAAAGGC ACCCGGCGTA TGAACCAGGT CAGTCTGCAT TTCGATACAG ACCTGGCCGA TACGCTCGCT TGGTCAGCGA AGACCTATGT AAACACCCTC GATGACAGGC GCTGGACGCA GTACTGGCGC ACGAGCTCAC AGCAGGAGCG CGACACTTAC GAGACTCAAT ACGGCGCCCT TACTTCACTG ACCTGGCGCC CGGAAGTCAT TTGGCTATAC GATTTCGCCC TTGAGGGCGG TACGGACGTA CAGCAACAGC AAAACCAGAG TGAGCGTTAT CGCACCAGAG ACCGTGCACG CCTGGCGACC ACTCGCGACC AGCAGTTTGA TTTCGACACC TATGGCGCTT ATGTCCAGGC CGAAATCAAA CCGTTTGAAT CGCTGAAGAT CGTACCGGCT TACCGGGTCG ACAAGATTCA GGGCGACTTC ACTAACGAAA TGACTGGCAC GGATTACGAC ATCAACGATT ACGGGCTGAT CAAGCAGCCG AAAATCAGCA TTGTCTATTC TCCGTGGGAT GTCGCCAGTT TCTATGCGAA CTGGGGGCGT ACCTTTCAAG TAGGGACGGG GGCTGCTGCC TACAAGATTC CGCCGAGGGA TACGGACCTT GCACCTTCTA TCAACGAGGG TTGGGAAACC GGGATCAAGT TCACGCCGGC GGACTGGGTG GATGGTCGAG TCGCCTATTG GCAGCAAGAG GCTTCCGGGG AAGTCAGTCG CAGGCTGAAC GACCCGAGTG GTGAGTCCGA TAACGTTGGG GAAACCCGGC GGTGGGGTTA TGACGTGCAA ATGAATCTGC ACCCTGACGA GCGCACTGAG ATATGGCTGG CCTATTCCTG GCAGTATTCG AAAATACTCC AGCCGAGTGC CACGTTGCCG GGCAGCAAAG GTCGGGAAAT CGACCATATC CCGCATCACC TTTACAACGC TGGCATCAGC TATGACGCGA CACCCGCATT ACAGTTGACT GCCTGGATGA ATGGCCAGAC GAACTATTAT CTGGAGCGGG AAAATACCAA GGGGACTTAC GGCGGTTACG TGCTGATGAA CCTCGGTGCA ACCTACAAGG TGACGCAGTC AGTAAGCGTT GACCTGCAGT TGAAAAACCT CACCAACCGA TATTATGAAT ACGTCTGGTA CGACCCGGAC GGTGCCCAGG GATCTCTGCA TTCCCCAGGT GATGGTCGCG CACTTTACAC CGGAGTGACT GTGGACTTCT GA
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Protein sequence | MPAPFTLRHA KRLSVSRSIW PLMSAGLFTM SPLCSALADT VKVEDSTLTL GTVTVQGATS GPLSTSSVLS SVDILGGDIL EKMPVNYSWE LFRRAPGVML TEFNQGTTSG KISFRGFNGE GEVNAIKLLI DGIPSNSNDG NMPYMDMIFP MELDSIEVVR GTSDARYGLN NIAGNVNMLT RTGGDYNKAR FRYGSFNTQE TQLAKGLESS NWTQNYFFAY QKSDGYRDHA DADKFSMSGK WFFTPDDDSY RIGLIARHYE TEAQEPGYLT EDDARHHPEM TNSFNATDKG TRRMNQVSLH FDTDLADTLA WSAKTYVNTL DDRRWTQYWR TSSQQERDTY ETQYGALTSL TWRPEVIWLY DFALEGGTDV QQQQNQSERY RTRDRARLAT TRDQQFDFDT YGAYVQAEIK PFESLKIVPA YRVDKIQGDF TNEMTGTDYD INDYGLIKQP KISIVYSPWD VASFYANWGR TFQVGTGAAA YKIPPRDTDL APSINEGWET GIKFTPADWV DGRVAYWQQE ASGEVSRRLN DPSGESDNVG ETRRWGYDVQ MNLHPDERTE IWLAYSWQYS KILQPSATLP GSKGREIDHI PHHLYNAGIS YDATPALQLT AWMNGQTNYY LERENTKGTY GGYVLMNLGA TYKVTQSVSV DLQLKNLTNR YYEYVWYDPD GAQGSLHSPG DGRALYTGVT VDF
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