Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1712 |
Symbol | cobC |
ID | 1183349 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1881932 |
End bp | 1882936 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637393084 |
Product | cobalamin biosynthesis protein CobC |
Protein accession | NP_791537 |
Protein GI | 28868918 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0079] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase |
TIGRFAM ID | [TIGR01140] L-threonine-O-3-phosphate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.394156 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTGAGC ACGGCGGGCG GCTGCGCGCA GCGGCGCAGC GTTACGGTAT CGATCAGGCC GACTGGCTGG ACCTGTCCAC CGGCATCGCG CCTTGGCCGT GGCCGATTCC CGATATACCG GCGTGTGCCT GGGCGCGGCT GCCCGAGACC GAAGACGGTC TGGAAGCCGC GGCCTGTGCC TATTACGGTG TGCCTCAATT GTTGCCGGTG TCTGGTTCGC AAGCCGCGAT TCAGGCGCTG CCACGGGTGC GCAGCGGCGG GCGGGTCGGC GTGTTGTCGC CGTGTTATGC CGAGCACGCG CATGCCTGGC GCAAAAGCGG CTATGTCGTG CGTGAGGTCG GCGAGCAGGA GGTCGAGTAT TTTCTCGACA GCCTCGACGT ACTGGTGGTG GTCAACCCCA ACAACCCGAC CGGCCTGCAC CTGAGCACCG AGCGCCTGCT GGAATGGCAT GCGCGACTGG CCGAGCGCGG TGGCTGGCTG GTGGTGGATG AAGCGTTCAT GGACAACACG CCAGGCCTGA GCCTGGCGGC CGAGACCTGG CGCATCGGGC TGATTGTGCT GCGTTCGTTC GGCAAGTTTT TCGGCCTGGC CGGGGTTCGG CTTGGCTTTG TGCTGGCTGA GCCGGTCTTG CTGAAAATGC TCGCACAGGA GATCGGCCCG TGGTCGGTCA GCGGCCCGAC CCGGATCATC GGCCAGGCCT GCCTGAGCGA TCTGCCTGGG CAGGCCCGGC AACGCGAGCG CAGTGATCGG GCCTGCGACC GGCTGGTGGC ATTGCTTGAT CACTACGGTC TGACGCCAGA TGGCGGCTGC GCGCTGTTTC AATGGTTGGT GACTGCCGAG GCGCAGTCGC TTTACGAGTT CTGTGCGCAA CGCGGCGTCC TGTTGCGTCT GTTCATGGGT GACACGCCCG AGTCTGGCAG CCTGCGTTTC GGCTTGCCCC GCGACGAGGC CGACTGGCAG CGTCTGCACA ACGTTCTGCT TGAATACCGC AAGGAGTTTG CATGA
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Protein sequence | MLEHGGRLRA AAQRYGIDQA DWLDLSTGIA PWPWPIPDIP ACAWARLPET EDGLEAAACA YYGVPQLLPV SGSQAAIQAL PRVRSGGRVG VLSPCYAEHA HAWRKSGYVV REVGEQEVEY FLDSLDVLVV VNPNNPTGLH LSTERLLEWH ARLAERGGWL VVDEAFMDNT PGLSLAAETW RIGLIVLRSF GKFFGLAGVR LGFVLAEPVL LKMLAQEIGP WSVSGPTRII GQACLSDLPG QARQRERSDR ACDRLVALLD HYGLTPDGGC ALFQWLVTAE AQSLYEFCAQ RGVLLRLFMG DTPESGSLRF GLPRDEADWQ RLHNVLLEYR KEFA
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