| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1640 |
|---|
| Symbol | |
|---|
| ID | 1183277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1797671 |
|---|
| End bp | 1799167 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637393012 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_791465 |
|---|
| Protein GI | 28868846 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2326] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.616022 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAAT CCGCTGAAAT CGGTCATGCC ATTGACGATG ACACCTACGA GGCCGCTTTG
CCTTCGCTGC GCGAAGCTTT GCTGGAGGCG CAGATAGACC TGCACGAGCA GGCCAAACGG
CAGATCATCG TGCTGATCAA CGGCATAGAA GGCGCGGGCA AGGGCGAGAC GGTCAAATTG
CTCAGCGAGT GGATGGACCC GCGCTTGATA GAAGTACGCA CCTTCGATCA GCAGACCGAT
GAGGAGCTGG CCCATCCGCC TGTCTGGCGC TACTGGCGAC AACTGCCTGC CAAAGGGCGC
ATGGGGATTT TCTTCGGCAA CTGGTACAGC CAGATGCTTC AGGGTCGCGT GCATGGGCAG
TACAAGGATG CGGTGCTCGA TCAGGCCATC AGCGGCGCCG AACGCCTAGA AAAGATGCTC
TGCGATGAAG GCGCGCTGAT CTTCAAATTC TGGTTTCACC TGTCCAAAAA ACAGATGAAG
CTGCGCCTCA AGACCCTCAA GGATGACCCG CTGCACAGCT GGCGCATCAG CCCGCTGGAC
TGGCAGCAAT CCAAGACCTA CGACAAGTTC GTGCGCTTCG GCGAGCGAGT CCTGCGCCGT
ACCAGCCGTG ACTACGCGCC CTGGCATGTG ATCGAGGGTG TGGACGCCAA TTACCGCAGC
CTGACCGTCG GCCGCCTGCT GCTGGAAGGC ATGCAGGCCG CGCTCAACAA GGTCGAACCC
GAGTCCAGCG CGCTGACGAT AGGGCCGCTG GCGATCCATA ACAATGAACG TACGTTGCTC
GACAGCCTCG ACCTGAGCCT GCACCTGAGC AAAGAAGACT ACCAGCACGA ACTGATCGCC
GAGCAGGCGC GCCTGTCCGG CAACCTGCGT GACAAACGCA TGAAAAGCCA CGCACTGGTG
GCGGTGTTCG AAGGCAATGA CGCTGCTGGC AAAGGCGGGG CAATTCGCCG GGTCGCGGCG
GCGCTGGACC CGCGTCAGTA CGCCATCGTG CCGATTGCTG CGCCGACTCA GGATGAGCGT
GCGCAGCCTT ATCTGTGGCG TTTCTGGCGG CAGATACCGG CACGCGGCAA ATTCACCATC
TTCGACCGCT CGTGGTACGG CCGGGTGCTG GTCGAGCGGG TCGAAGGCTT TTGCAGCGAG
TCCGACTGGA AACGCGCCTA CGCCGAAATC AACGATTTCG AAGAGCAGCT CACCGAAGCC
GGCGTGGTGG TGGTCAAGTT CTGGCTGGCG ATTGACGAGC AAACCCAGCT GGAGCGTTTT
CAGGAGCGCG AAAAGATCCC GTTCAAGCGC TACAAGATCA CCGAAGACGA CTGGCGCAAC
CGCAAGAAAT GGCCCGATTA TCGTCAGGCT GTCGGCGACA TGGTGGACCG CACCAGCACC
GAGATTGCAC CGTGGACACT GATCGAAGCC AATGATAAGC GCTGGGCCAG GGTCAAGGTG
TTGCGCACCA TCAACGAGGC GCTGGAAAAA GCCTTTGCCA GAGACAAGAA GAAGTGA
|
|---|
| Protein sequence | MFESAEIGHA IDDDTYEAAL PSLREALLEA QIDLHEQAKR QIIVLINGIE GAGKGETVKL
LSEWMDPRLI EVRTFDQQTD EELAHPPVWR YWRQLPAKGR MGIFFGNWYS QMLQGRVHGQ
YKDAVLDQAI SGAERLEKML CDEGALIFKF WFHLSKKQMK LRLKTLKDDP LHSWRISPLD
WQQSKTYDKF VRFGERVLRR TSRDYAPWHV IEGVDANYRS LTVGRLLLEG MQAALNKVEP
ESSALTIGPL AIHNNERTLL DSLDLSLHLS KEDYQHELIA EQARLSGNLR DKRMKSHALV
AVFEGNDAAG KGGAIRRVAA ALDPRQYAIV PIAAPTQDER AQPYLWRFWR QIPARGKFTI
FDRSWYGRVL VERVEGFCSE SDWKRAYAEI NDFEEQLTEA GVVVVKFWLA IDEQTQLERF
QEREKIPFKR YKITEDDWRN RKKWPDYRQA VGDMVDRTST EIAPWTLIEA NDKRWARVKV
LRTINEALEK AFARDKKK
|
|---|
| |