| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1616 |
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| Symbol | |
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| ID | 1183253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1771627 |
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| End bp | 1772703 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637392988 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_791441 |
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| Protein GI | 28868822 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.515769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAC ATCACCGTAG GGGGCTGGCG TTCGCAAAGC GAATTTACGC CCCGAGAGCA
CTCGGTGTCA GTGTTGGTTT TATTACTGTC GCTGTGTCCT TGTATTACAT GAATGCCGCG
CACTGGCTTT GGTCACTGGC GCTGCTCAAT TCATTGACAT GGCCTCATAT TGCTTACCAG
ATCGCGAAAA AGTCACGCCA ACCCTACCTG GCTGAATGGC GCAACATACT GTTCGATTCG
CTGATGGGCG GGTTCTGGAT TGGCGCAATG GGGTTCAGTG CTGTTCCAAG CGTCACGGTA
ATAGCCATGA TGGCCATGCA CAACATGGCG GCTGCAGGCC CGCGCCTTAT GCTGCAAGGC
TTTGGCGCCC AGGCACTGGG GGTGTTGATC TCGCTGGCGG TGCTCAACCC CGTCGTCAAC
CTGGACGGCA ACATGATGCA GATCTATGCC TGCCTGCCCG TGCTGGTGAT CTACCCCATT
TTCATCGGCT GGATGAACCA TCAGGTCACG CTCAAGCTCT GGGAGCATCG CAACATCCTG
CGCACGCTCA GCCGCACCGA CAGCCTGACC GGCCTGCTCA ATCATGGCGC CTGGAAGGAC
CTGCTTGATC TTGAGTTCGC CAAGAGCCAG AACCAGCATC AGGAATGCGT GATTGCGCTG
ATCGATATTG ATCACTTCAA GATCATCAAC GACACCTACG GCCACCTCAT GGGCGATACG
GTGCTGCAGA ACATCAGTGA AGCACTGATC GAAAACCTGC GCGATTCCGA CCTGATCGGA
CGCTGTGGCG GCGATGAGTT CTGTGTGATT CTGCCCAACA CCAGCCTGCT CCAGGCACGG
GAAATCCTTG AACGCATGCG CCTGGCGATC GACGAACTGA CCTATTCACT GCATTGCGAC
CTCAAGGCCA GCCTCAGCGT CGGCATCGCT GCCTACTCAC CTGAACTGCC CGATGCCTCA
TCATGGCTGC ATGAAGCTGA CAAGGCCCTG TACCTCGCCA AAAGCACCGG CCGCAACCGC
GTGGTCAGCG CCGAAGATGC CGCCCCGGAA AGCCAGATCG CCAGCGCCGG CATCTGA
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| Protein sequence | MSTHHRRGLA FAKRIYAPRA LGVSVGFITV AVSLYYMNAA HWLWSLALLN SLTWPHIAYQ
IAKKSRQPYL AEWRNILFDS LMGGFWIGAM GFSAVPSVTV IAMMAMHNMA AAGPRLMLQG
FGAQALGVLI SLAVLNPVVN LDGNMMQIYA CLPVLVIYPI FIGWMNHQVT LKLWEHRNIL
RTLSRTDSLT GLLNHGAWKD LLDLEFAKSQ NQHQECVIAL IDIDHFKIIN DTYGHLMGDT
VLQNISEALI ENLRDSDLIG RCGGDEFCVI LPNTSLLQAR EILERMRLAI DELTYSLHCD
LKASLSVGIA AYSPELPDAS SWLHEADKAL YLAKSTGRNR VVSAEDAAPE SQIASAGI
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