| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1375 |
|---|
| Symbol | hopM1 |
|---|
| ID | 1183011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1511461 |
|---|
| End bp | 1513599 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637392747 |
|---|
| Product | type III effector HopM1 |
|---|
| Protein accession | NP_791202 |
|---|
| Protein GI | 28868583 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0101421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGTT CGCGGATCGG CGGGGCCGGT GGCGTCGAAC TCAGCCGGGT AAACCAGCAG
CACGATACTG TTCCCGCCCA GACAGCTCAC CCAAATGCAG TCACTGCAGG CATGAATCCG
CCGCTGACTC CCGATCAGTC AGGGTCACAC GCGACAGAAA GCTCGTCTGC CGGCGCGGCG
CGGCTGAATG TCGCGGCTCG ACACACACAG CTTTTGCAGG CCTTCAAGGC TGAGCATGGG
ACGGCTCCGG TCAGCGGCGC GCCGATGATC AGTTCGCGTG CTGCGTTGTT GATCGGTAGT
CTGCTGCAGG CCGAGCCTTT GCCTTTTGAA GTCATGGCCG AGAAATTGTC TCCTGAGCGC
TATCAACTGA AGCAGTTTCA GGGCTCGGAC TTGCAGCAGC GGCTGGAAAA ATTCGCCCAG
CCGGGTCAGA TACCGGATAA AGCCGAGGTC GGGCAACTGA TCAAGGGTTT TGCTCAGTCG
GTCGCTGATC AACTGGAGCA CTTTCAACTG ATGCATGACG CTTCGCCCGC AACGGTAGGC
CAGCATGCAA AAGCGGACAA GGCGACGCTT GCCGTCAGTC AGACTGCCCT TGGCGAATAC
GCCGGTCGTG CAAGCAAGGC AATCGGCGAA GGCCTGAGCA ACAGCATCGC GTCGCTGGAT
GAGCACATCA GTGCGCTGGA TCTCACTCTG CAAGATGCCG AACAGGGCAA CAAGGAGTCT
CTGCACGCTG ACAGGCAGGC GCTGGTCGAC GCCAAAACCA CCCTGGTAGG TTTGCACGCC
GATTTCGTCA AGTCGCCGGA GGCCAAGCGC CTTGCTTCGG TCGCCGCACA TACGCAACTG
GACAACGTCG TCAGCGATCT CGTCACTGCC CGTAACACGG TGGGTGGCTG GAAAGGTGCA
GGGCCGATTG TCGCGGCTGC GGTTCCGCAG TTCTTGTCTT CAATGACACA CTTGGGTTAT
GTGCGTTTGT CCACCAGCGA CAAGCTGCGA GACACGATTC CCGAGACCAG CAGCGACGCC
AACATGCTCA AGGCTTCGAT AATCGGGATG GTGGCGGGCA TTGCTCACGA GACGGTCAAC
AGCGTGGTCA AGCCGATGTT TCAGGCCGCC TTGCAGAAGA CTGGCCTCAA CGAACGCCTG
AACATGGTGC CAATGAAGGC TGTGGATACC AATACGGTTA TTCCTGACCC CTTCGAGCTG
AAAAGCGAAC ACGGTGAGCT GGTCAAAAAA ACGCCCGAGG AAGTCGCTCA GGACAAGGCG
TTCGTGAAAA GTGAACGCGC GCTGCTGAAC CAGAAGAAGG TTCAGGGTTC GTCCACCCAT
CCGGTAGGTG AGCTGATGGC TTACAGTGCC TTCGGTGGTT CTCAGGCTGT GCGCCAGATG
CTCAACGATG TTCACCAGAT CAATGGGCAG ACGCTGAGTG CAAGAGCTCT GGCATCCGGT
TTTGGCGGGG CGGTGTCTGC CAGTTCGCAA ACGCTGCTGC AATTGAAGTC GAATTATGTC
GACCCGCAAG GGCGCAAAAT TCCGGTATTT ACCCCGGACC GCGCCGAGAG CGATCTGAAA
AAGGACCTGC TCAAAGGTAT GGACCTGCGC GAGCCGTCGG TACGCACCAC GTTCTACAGC
AAGGCTCTTT CGGGTATTCA GAGTTCTGCA CTGACCTCGG CACTGCCGCC TGTGACCGCT
CAGGCTGAAG GCGCAAGTGG CACGCTCAGT GCGGGGGCTA TTTTGCGCAA CATGGCCCTG
GCAGCGACGG GTTCGGTGTC CTATCTGTCC ACGTTGTACA CCAACCAGTC GGTTACCGCA
GAAGCCAAGG CGTTGAAAGC GGCAGGCATG GGCGGTGCAA CACCTATGCT GGACCGTACC
GAGACGGCTT TGAATAACAT CCGTCATCCG AACAGGGAGT CTCTGCCACA TACGTTCCAG
AAGAGCACGT TGAGCGGTAT CCCACGAGTC GCGGAAAACG CCTATCACAT GGGACGAGGC
GCATTGCAGT TGCCTACCCA GATGGCCGTG GATACGGTTC GGGTCGTGGA TGAAGGTGTG
TTGAACGCAG TCGCGTCAGC ACGCGAGGCG CTTAAGCAGC CGACAAAAGA CGATGACGCA
TTGAGGGCAC TTGAAGAGGG CTTGCTTGAC CCGCGTTAA
|
|---|
| Protein sequence | MISSRIGGAG GVELSRVNQQ HDTVPAQTAH PNAVTAGMNP PLTPDQSGSH ATESSSAGAA
RLNVAARHTQ LLQAFKAEHG TAPVSGAPMI SSRAALLIGS LLQAEPLPFE VMAEKLSPER
YQLKQFQGSD LQQRLEKFAQ PGQIPDKAEV GQLIKGFAQS VADQLEHFQL MHDASPATVG
QHAKADKATL AVSQTALGEY AGRASKAIGE GLSNSIASLD EHISALDLTL QDAEQGNKES
LHADRQALVD AKTTLVGLHA DFVKSPEAKR LASVAAHTQL DNVVSDLVTA RNTVGGWKGA
GPIVAAAVPQ FLSSMTHLGY VRLSTSDKLR DTIPETSSDA NMLKASIIGM VAGIAHETVN
SVVKPMFQAA LQKTGLNERL NMVPMKAVDT NTVIPDPFEL KSEHGELVKK TPEEVAQDKA
FVKSERALLN QKKVQGSSTH PVGELMAYSA FGGSQAVRQM LNDVHQINGQ TLSARALASG
FGGAVSASSQ TLLQLKSNYV DPQGRKIPVF TPDRAESDLK KDLLKGMDLR EPSVRTTFYS
KALSGIQSSA LTSALPPVTA QAEGASGTLS AGAILRNMAL AATGSVSYLS TLYTNQSVTA
EAKALKAAGM GGATPMLDRT ETALNNIRHP NRESLPHTFQ KSTLSGIPRV AENAYHMGRG
ALQLPTQMAV DTVRVVDEGV LNAVASAREA LKQPTKDDDA LRALEEGLLD PR
|
|---|
| |