| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1343 |
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| Symbol | |
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| ID | 1182979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1473898 |
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| End bp | 1475637 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637392715 |
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| Product | dipeptidase, putative |
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| Protein accession | NP_791170 |
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| Protein GI | 28868551 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01887] dipeptidase, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.539449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTCG CACTCAAAAA ACTCGCCGCA GCCACGCTGC TACTGACCAG CCTTTCAGCC
GTGACTACGT CTGCCTATGC CAACCTTGAT GCGCAACAGA GCGCCGTCAT CGTCAAGACG
TTCAGCGGTA CATCGTTAAC AGACTTCAGG CAGTTTCTGG CGAGCGTGAA CAAGAACGAT
ATCGCCAGGA GCGCAAATAT CGGCCCTGCG ATCGCGGCCT TTCTCGACAA TAAAAAGCTT
TCAGAAGCGC AGCAAAACGA AATTCATCGT CTGCTCGGCC TATACGCGCG GATCAAGTAC
GGCAGCGCGG CCACCGAGAC GCTGCGTGAG CTGGTCGCCA TTCCAACGGT GCGTGTGGAC
GGCGTTGCCC AGCATGAGAA CCCTGAGTTC ATCAAGATCG CCGAGAAGAT CAAAAGCCTT
GCCGAACGCT TCGACCTTAA GTTTCGCAAC ATCGATAACC GCGTCTATGA AGTCTCGCTC
GACGGCAGCG GCGATGAAGT CGTAGGTATT CATGTGCATG CCGACGTTGT CCCCGTGACC
CCAGAGAATT GGGTATTACC TGACGGCACT CGGCTGGACC CGTTCAAAGT CACTTTGATC
GGTGACCGCA TGTATGGCCG TGGCACCGAA GACGACAAGA ACGGCATCGT GGTGTCGCTG
TATGCCATGA AAGTCATCAA AGAAGAAAAG CTGCCGCTGG CGAGAAACTT CAAGCTGCTG
ATAGACACCA CTGAAGAGAC TGCCGGCGAT GCCATTCCCT ATTACTTCGA GCGCAATCCG
ACACCCAATT ACAACCTGGC GCTGGATGGC GGGTATCCGG TTGTGATTGC GGAGAAAGGC
TACGGCACCG TCATGGCCAG TTTTGCCAAG CGCGCTGCGC AGGGTGAGGG CGCCGAGATC
GTTTCGATGA CGGGTGGCAT GGCCACCAAT CAGATTCCGT CGAAATCAGT CGTTACGCTG
GTGACCGACA AGCCTGCGCA ACTGGCAGCC AGCCTGCAAC AGGCCGGTGC AGATTATGTG
AAACGCAATG GCGGCAACTT CGAGATTGCC GCCAACGTGG AAGGCAAGGA CGTCAAGTTG
ACGGTGACCG GTGTTTCCGC GCACTCATCT GCGCCCGAGT CTGGGGTCAA CCCGGTAGCG
AGGATGCTGG ATTTCATCAA CAGCCTCGAC GGCAACGTTG CGCTCAAGCA CAACCACATC
ACGGATGCCG CTCGCTATGC GGCCGACAAC TGGGGCCTGG ACTATCTGGG CGGCAAGTTG
GGTGTTGGTT TCTCCGATGA GTTCATGGGG CCGCTGACGA CTTCCCTGAC TTACGTTGCG
CTGGATGACA AGGCGTTCAA ACTGGCGGTC AATTTGCGCG TGCCGAAGGG CAAGTCTCCA
GAACTGCTCA AATCTGAAAT CGCCGAAAAA CTCACGGCAT GGAGCACGAA GACCGCTATC
AACCCGGTAT TCGACTATTC CATTGCCGAG CCGATGTATC GCAACCCGGA AGGCGAGTGG
GTCAAGGCAT TGCTCGCTGT GGCCACTGAA AACCTCGACA TGAAACACGC GTTCGGCACT
TCGGCGGGCG CTACATCGGT TCATGAGTTG CCCAACGGCG TGCAGTTCGG TCTGGCAAGA
CCTGAAGTCA AATACACCGG CCACACTGAT AACGAGTTCA AGACCACCGA GCAGTTTCTG
CTCGACCTGC AGATCGTGAC CGAGATGATG GGCCGTATCG GGCAGCTGCC GAAACTCTGA
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| Protein sequence | MNFALKKLAA ATLLLTSLSA VTTSAYANLD AQQSAVIVKT FSGTSLTDFR QFLASVNKND
IARSANIGPA IAAFLDNKKL SEAQQNEIHR LLGLYARIKY GSAATETLRE LVAIPTVRVD
GVAQHENPEF IKIAEKIKSL AERFDLKFRN IDNRVYEVSL DGSGDEVVGI HVHADVVPVT
PENWVLPDGT RLDPFKVTLI GDRMYGRGTE DDKNGIVVSL YAMKVIKEEK LPLARNFKLL
IDTTEETAGD AIPYYFERNP TPNYNLALDG GYPVVIAEKG YGTVMASFAK RAAQGEGAEI
VSMTGGMATN QIPSKSVVTL VTDKPAQLAA SLQQAGADYV KRNGGNFEIA ANVEGKDVKL
TVTGVSAHSS APESGVNPVA RMLDFINSLD GNVALKHNHI TDAARYAADN WGLDYLGGKL
GVGFSDEFMG PLTTSLTYVA LDDKAFKLAV NLRVPKGKSP ELLKSEIAEK LTAWSTKTAI
NPVFDYSIAE PMYRNPEGEW VKALLAVATE NLDMKHAFGT SAGATSVHEL PNGVQFGLAR
PEVKYTGHTD NEFKTTEQFL LDLQIVTEMM GRIGQLPKL
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